corrcoverage: Correcting the Coverage of Credible Sets from Bayesian Genetic Fine Mapping

Using a computationally efficient method, the package can be used to find the corrected coverage estimate of a credible set of putative causal variants from Bayesian genetic fine-mapping. The package can also be used to obtain a corrected credible set if required; that is, the smallest set of variants required such that the corrected coverage estimate of the resultant credible set is within some user defined accuracy of the desired coverage. Maller et al. (2012) <doi:10.1038/ng.2435>, Wakefield (2009) <doi:10.1002/gepi.20359>, Fortune and Wallace (2018) <doi:10.1093/bioinformatics/bty898>.

Package details

AuthorAnna Hutchinson [aut, cre], Chris Wallace [aut], Kevin Kunzmann [ctb]
MaintainerAnna Hutchinson <anna.hutchinson@mrc-bsu.cam.ac.uk>
LicenseMIT + file LICENSE
Version1.2.1
URL https://annahutch.github.io/corrcoverage
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("corrcoverage")

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corrcoverage documentation built on Dec. 7, 2019, 1:07 a.m.