approx.bf.p | Find approx. Bayes factors (ABFs) |
bf_func | Calculate ABFs from Z scores |
cor2 | Correlation matrix of SNPS |
corrcov | Corrected coverage estimate using Z-scores and MAFs |
corrcov_bhat | Corrected coverage estimate using estimated effect sizes and... |
corrcov_CI | Confidence interval for corrected coverage estimate using... |
corrcov_CI_bhat | Confidence interval for corrected coverage estimate using... |
corrcov_nvar | Corrected coverage estimate using Z-scores and MAFs (fixing... |
corrcov_nvar_bhat | Corrected coverage estimate using estimated effect sizes and... |
corrected_cov | Corrected coverage estimate of the causal variant in the... |
corrected_cs | Corrected credible set using Z-scores and MAFs |
corrected_cs_bhat | Corrected credible set using estimated effect sizes and their... |
credset | Credible set of genetic variants |
credsetC | Credible set of variants from matrix of PPs |
credsetmat | Obtain credible sets from a matrix of posterior probabilities |
dot-zj_abf | Internal function: Simulate nrep ABFs from joint Z-score... |
dot-zj_pp | Simulate posterior probabilities of causality from joint... |
est_mu | Estimate the true effect at the causal variant using Z-scores... |
est_mu_bhat | Estimate the true effect at the causal variant using... |
logsum | logsum |
logsum_matrix | logsum rows of a matrix |
pipe | Pipe operator |
ppfunc | Find PPs of SNPs from Z-scores |
ppfunc.mat | Find PPs of SNPs from matrix of Z-scores |
prop_cov | Proportion of credible sets containing the causal variant |
pvals_pp | Find PPs for SNPs and null model from P-values and MAFs |
Var.data.cc | Variance of the estimated effect size for case-control data |
z0_pp | Find PPs for SNPs and null model from Z-scores and MAFs |
zj_pp | Simulate posterior probabilities of causality from joint... |
z_sim | Simulate marginal Z-scores from joint Z-score vector |
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