Man pages for corrcoverage
Correcting the Coverage of Credible Sets from Bayesian Genetic Fine Mapping
| approx.bf.p | Find approx. Bayes factors (ABFs) |
| bf_func | Calculate ABFs from Z scores |
| cor2 | Correlation matrix of SNPS |
| corrcov | Corrected coverage estimate using Z-scores and MAFs |
| corrcov_bhat | Corrected coverage estimate using estimated effect sizes and... |
| corrcov_CI | Confidence interval for corrected coverage estimate using... |
| corrcov_CI_bhat | Confidence interval for corrected coverage estimate using... |
| corrcov_nvar | Corrected coverage estimate using Z-scores and MAFs (fixing... |
| corrcov_nvar_bhat | Corrected coverage estimate using estimated effect sizes and... |
| corrected_cov | Corrected coverage estimate of the causal variant in the... |
| corrected_cs | Corrected credible set using Z-scores and MAFs |
| corrected_cs_bhat | Corrected credible set using estimated effect sizes and their... |
| credset | Credible set of genetic variants |
| credsetC | Credible set of variants from matrix of PPs |
| credsetmat | Obtain credible sets from a matrix of posterior probabilities |
| dot-zj_abf | Internal function: Simulate nrep ABFs from joint Z-score... |
| dot-zj_pp | Simulate posterior probabilities of causality from joint... |
| est_mu | Estimate the true effect at the causal variant using Z-scores... |
| est_mu_bhat | Estimate the true effect at the causal variant using... |
| logsum | logsum |
| logsum_matrix | logsum rows of a matrix |
| pipe | Pipe operator |
| ppfunc | Find PPs of SNPs from Z-scores |
| ppfunc.mat | Find PPs of SNPs from matrix of Z-scores |
| prop_cov | Proportion of credible sets containing the causal variant |
| pvals_pp | Find PPs for SNPs and null model from P-values and MAFs |
| Var.data.cc | Variance of the estimated effect size for case-control data |
| z0_pp | Find PPs for SNPs and null model from Z-scores and MAFs |
| zj_pp | Simulate posterior probabilities of causality from joint... |
| z_sim | Simulate marginal Z-scores from joint Z-score vector |
