read_bigwig: Read data from bigWig files.

In cpp11bigwig: Read bigWig and bigBed Files

Read data from bigWig files.

Description

Read data from bigWig files.

Usage

read_bigwig(bwfile, chrom = NULL, start = NULL, end = NULL, as = NULL)

Arguments

bwfile	filename for bigWig file
chrom	read data for specific chromosome
start	start position for data
end	end position for data
as	return data as a specific type. The default is a tibble (tbl) or GRanges (gr)

Value

tibble

See Also

https://github.com/dpryan79/libBigWig

https://github.com/brentp/bw-python

Examples

bw <- system.file("extdata", "test.bw", package = "cpp11bigwig")

read_bigwig(bw)

read_bigwig(bw, chrom = "10")

read_bigwig(bw, chrom = "1", start = 100, end = 130)

read_bigwig(bw, as = "GRanges")

cpp11bigwig documentation built on April 3, 2025, 7:35 p.m.