crmn: CCMN and other noRMalizatioN methods for metabolomics data

Implements the Cross-contribution Compensating Multiple standard Normalization (CCMN) method and other normalization algorithms.

Author
Henning Redestig
Date of publication
2014-11-20 08:08:19
Maintainer
Henning Redestig <henning.red@gmail.com>
License
GPL (>= 3)
Version
0.0.20

View on CRAN

Man pages

analytes
Accessor for the analytes
analytes_eset
Accessor for the analytes
analytes_other
Accessor for the analytes
crmn
CRMN
dropunusedlevels
Drop unused levels
makeX-methods
Make X
method-methods
Accessor for the method
mexprs-methods
Matrix safe accessor of expression slot
mexprs-rep-methods
Accessor
mix
Dilution mixture dataset.
model-methods
Accessor for the model
nFit
Normalization model
normalize
Normalize a metabolomics dataset
normFit
Fit a normalization model
normPred
Predict for normalization
pcaMuffle
Muffle the pca function
plot.nFit
Plot a statistics for CRMN normalization model
sFit-method
Accessor for the standards model
show
Show method for nFit
show_nfit
Show nfit
standards
Accessor for the Internal Standards
standards_eset
Accessor for the Internal Standards
standardsFit
Standards model
standards_other
Accessor for the Internal Standards
standardsPred
Predict effect for new data (or get fitted data)
weightnorm
Normalize by sample weight

Files in this package

crmn
crmn/COPYING
crmn/inst
crmn/inst/CITATION
crmn/inst/doc
crmn/inst/doc/crmn.R
crmn/inst/doc/crmn.pdf
crmn/inst/doc/crmn.Rnw
crmn/NAMESPACE
crmn/NEWS
crmn/data
crmn/data/mix.rda
crmn/R
crmn/R/classes.R
crmn/R/generic.R
crmn/R/crmn-package.R
crmn/R/misc.R
crmn/R/norm.R
crmn/vignettes
crmn/vignettes/crmn.Rnw
crmn/MD5
crmn/README
crmn/build
crmn/build/vignette.rds
crmn/DESCRIPTION
crmn/man
crmn/man/nFit.Rd
crmn/man/mexprs-rep-methods.Rd
crmn/man/mix.Rd
crmn/man/analytes_eset.Rd
crmn/man/show.Rd
crmn/man/standardsPred.Rd
crmn/man/makeX-methods.Rd
crmn/man/pcaMuffle.Rd
crmn/man/analytes.Rd
crmn/man/model-methods.Rd
crmn/man/crmn.Rd
crmn/man/mexprs-methods.Rd
crmn/man/standardsFit.Rd
crmn/man/standards_eset.Rd
crmn/man/normFit.Rd
crmn/man/normPred.Rd
crmn/man/standards.Rd
crmn/man/dropunusedlevels.Rd
crmn/man/show_nfit.Rd
crmn/man/analytes_other.Rd
crmn/man/standards_other.Rd
crmn/man/method-methods.Rd
crmn/man/normalize.Rd
crmn/man/plot.nFit.Rd
crmn/man/sFit-method.Rd
crmn/man/weightnorm.Rd