options.md
In crosstable: Crosstables for Descriptive Analyses

All options work

Code
  as.data.frame(ct_noopt)
Output
            .id                    label        variable                                                      straight                                                       vshaped                                                            NA                                                                                                              effect                                                   test
  1         cyl      Number of cylinders               4                                                    7 (87.50%)                                                    1 (12.50%)                                                             2 Odds ratio [95% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0 to NA]\n8 vs 4: 5.98e+09 [2.27e-200 to NA] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
  2         cyl      Number of cylinders               6                                                        0 (0%)                                                   1 (100.00%)                                                             3 Odds ratio [95% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0 to NA]\n8 vs 4: 5.98e+09 [2.27e-200 to NA] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
  3         cyl      Number of cylinders               8                                                        0 (0%)                                                  11 (100.00%)                                                             2 Odds ratio [95% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0 to NA]\n8 vs 4: 5.98e+09 [2.27e-200 to NA] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
  4         cyl      Number of cylinders              NA                                                             2                                                             2                                                             1 Odds ratio [95% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0 to NA]\n8 vs 4: 5.98e+09 [2.27e-200 to NA] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
  5        carb    Number of carburetors       Min / Max                                                     1.0 / 2.0                                                     2.0 / 8.0                                                     1.0 / 4.0                     Difference in means (bootstrap CI), ref='straight'\nvshaped minus straight: 2.40 [1.54 to 3.26]             p value: 0.0001 \n(Wilcoxon rank sum test)
  6        carb    Number of carburetors       Med [IQR]                                                 1.0 [1.0;2.0]                                                 4.0 [2.5;4.0]                                                 2.5 [2.0;4.0]                     Difference in means (bootstrap CI), ref='straight'\nvshaped minus straight: 2.40 [1.54 to 3.26]             p value: 0.0001 \n(Wilcoxon rank sum test)
  7        carb    Number of carburetors      Mean (std)                                                     1.3 (0.5)                                                     3.7 (1.6)                                                     2.8 (1.2)                     Difference in means (bootstrap CI), ref='straight'\nvshaped minus straight: 2.40 [1.54 to 3.26]             p value: 0.0001 \n(Wilcoxon rank sum test)
  8        carb    Number of carburetors          N (NA)                                                         9 (0)                                                        15 (0)                                                         8 (0)                     Difference in means (bootstrap CI), ref='straight'\nvshaped minus straight: 2.40 [1.54 to 3.26]             p value: 0.0001 \n(Wilcoxon rank sum test)
  9  qsec_posix                Date+time       Min / Max                     2010-01-17 22:36:00 - 2010-01-21 01:14:24                     2010-01-15 13:00:00 - 2010-01-19 01:00:00                     2010-01-16 21:09:36 - 2010-01-23 22:36:00         Difference in means (t-test CI), ref='straight'\nvshaped minus straight: -1.94e+05 [-2.76e+05 to -1.12e+05]                  p value: 0.0001 \n(Two Sample t-test)
  10 qsec_posix                Date+time       Med [IQR] 2010-01-19 22:36:00 [2010-01-19 15:24:00;2010-01-20 12:16:48] 2010-01-18 01:28:48 [2010-01-16 13:00:00;2010-01-18 15:24:00] 2010-01-19 15:24:00 [2010-01-18 01:28:48;2010-01-21 01:00:00]         Difference in means (t-test CI), ref='straight'\nvshaped minus straight: -1.94e+05 [-2.76e+05 to -1.12e+05]                  p value: 0.0001 \n(Two Sample t-test)
  11 qsec_posix                Date+time      Mean (std)                              2010-01-19 23:16:00 (22.7 hours)                                2010-01-17 17:22:04 (1.2 days)                                2010-01-19 20:44:24 (2.2 days)         Difference in means (t-test CI), ref='straight'\nvshaped minus straight: -1.94e+05 [-2.76e+05 to -1.12e+05]                  p value: 0.0001 \n(Two Sample t-test)
  12 qsec_posix                Date+time          N (NA)                                                         9 (0)                                                        15 (0)                                                         8 (0)         Difference in means (t-test CI), ref='straight'\nvshaped minus straight: -1.94e+05 [-2.76e+05 to -1.12e+05]                  p value: 0.0001 \n(Two Sample t-test)
  13       surv Dummy survival (disp/am)          t=71.1                                                    0.89 (1/9)                                                   1.00 (0/15)                                                    1.00 (0/8)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  14       surv Dummy survival (disp/am)          t=75.7                                                    0.78 (1/8)                                                   1.00 (0/15)                                                    1.00 (0/8)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  15       surv Dummy survival (disp/am)          t=78.7                                                    0.67 (1/7)                                                   1.00 (0/15)                                                    1.00 (0/8)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  16       surv Dummy survival (disp/am)            t=79                                                    0.56 (1/6)                                                   1.00 (0/15)                                                    1.00 (0/8)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  17       surv Dummy survival (disp/am)          t=95.1                                                    0.44 (1/5)                                                   1.00 (0/15)                                                    1.00 (0/8)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  18       surv Dummy survival (disp/am)           t=108                                                    0.33 (1/4)                                                   1.00 (0/15)                                                    1.00 (0/8)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  19       surv Dummy survival (disp/am)         t=120.1                                                    0.33 (0/3)                                                   1.00 (0/15)                                                    1.00 (0/8)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  20       surv Dummy survival (disp/am)         t=120.3                                                    0.33 (0/2)                                                   0.93 (1/15)                                                    1.00 (0/8)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  21       surv Dummy survival (disp/am)           t=121                                                    0.17 (1/2)                                                   0.93 (0/14)                                                    1.00 (0/8)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  22       surv Dummy survival (disp/am)         t=140.8                                                    0.17 (0/1)                                                   0.93 (0/14)                                                    1.00 (0/8)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  23       surv Dummy survival (disp/am)           t=145                                                    0.17 (0/1)                                                   0.87 (1/14)                                                    1.00 (0/7)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  24       surv Dummy survival (disp/am)         t=146.7                                                    0.17 (0/1)                                                   0.87 (0/13)                                                    1.00 (0/7)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  25       surv Dummy survival (disp/am)           t=160                                                    0.17 (0/1)                                                   0.73 (2/13)                                                    1.00 (0/6)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  26       surv Dummy survival (disp/am)         t=167.6                                                    0.17 (0/1)                                                   0.73 (0/11)                                                    1.00 (0/6)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  27       surv Dummy survival (disp/am)           t=225                                                    0.17 (0/1)                                                   0.73 (0/11)                                                    1.00 (0/4)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  28       surv Dummy survival (disp/am)           t=258                                                    0.17 (0/1)                                                   0.73 (0/11)                                                    1.00 (0/3)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  29       surv Dummy survival (disp/am)         t=275.8                                                    0.17 (0/0)                                                   0.73 (0/11)                                                    1.00 (0/3)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  30       surv Dummy survival (disp/am)         t=275.8                                                    0.17 (0/0)                                                   0.73 (0/11)                                                    1.00 (0/3)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  31       surv Dummy survival (disp/am)           t=301                                                    0.17 (0/0)                                                    0.65 (1/9)                                                    1.00 (0/2)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  32       surv Dummy survival (disp/am)           t=304                                                    0.17 (0/0)                                                    0.65 (0/8)                                                    1.00 (0/2)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  33       surv Dummy survival (disp/am)           t=318                                                    0.17 (0/0)                                                    0.65 (0/7)                                                    1.00 (0/2)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  34       surv Dummy survival (disp/am)           t=350                                                    0.17 (0/0)                                                    0.65 (0/6)                                                    1.00 (0/2)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  35       surv Dummy survival (disp/am)           t=351                                                    0.17 (0/0)                                                    0.52 (1/5)                                                    1.00 (0/2)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  36       surv Dummy survival (disp/am)           t=360                                                    0.17 (0/0)                                                    0.52 (0/4)                                                    1.00 (0/2)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  37       surv Dummy survival (disp/am)           t=400                                                    0.17 (0/0)                                                    0.52 (0/4)                                                    1.00 (0/0)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  38       surv Dummy survival (disp/am)           t=440                                                    0.17 (0/0)                                                    0.52 (0/3)                                                    1.00 (0/0)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  39       surv Dummy survival (disp/am)           t=460                                                    0.17 (0/0)                                                    0.52 (0/2)                                                    1.00 (0/0)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  40       surv Dummy survival (disp/am)           t=472                                                    0.17 (0/0)                                                    0.52 (0/1)                                                    1.00 (0/0)                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  41       surv Dummy survival (disp/am) Median survival                                                          95.1                                                          <NA>                                                          <NA>                                                    Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
Code
  as.data.frame(ct_opt)
Output
            .id      label                     variable                straight               vshaped                    NA                 Total                                                                                                                           effect                                                   test
  1         cyl        cyl                            4         7 (87.5%, 100%)       1 (12.5%, 7.7%)                     2              10 (37%) Odds ratio [70% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0.00e+00 to NA]\n8 vs 4: 5.98e+09 [1.27e-79 to 2.72e+247] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
  2         cyl        cyl                            6                       0        1 (100%, 7.7%)                     3             4 (14.8%) Odds ratio [70% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0.00e+00 to NA]\n8 vs 4: 5.98e+09 [1.27e-79 to 2.72e+247] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
  3         cyl        cyl                            8                       0      11 (100%, 84.6%)                     2            13 (48.1%) Odds ratio [70% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0.00e+00 to NA]\n8 vs 4: 5.98e+09 [1.27e-79 to 2.72e+247] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
  4         cyl        cyl                           NA                       2                     2                     1                     5 Odds ratio [70% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0.00e+00 to NA]\n8 vs 4: 5.98e+09 [1.27e-79 to 2.72e+247] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
  5         cyl        cyl                        Total               9 (37.5%)            15 (62.5%)                     8             32 (100%) Odds ratio [70% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0.00e+00 to NA]\n8 vs 4: 5.98e+09 [1.27e-79 to 2.72e+247] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
  6        carb       carb                    Mean (SD)               1.3 (0.5)             3.7 (1.6)             2.8 (1.2)             2.8 (1.6)                                       Difference in means (bootstrap CI), ref='straight'\nvshaped minus straight: 2.4 [2 to 2.8]             p value: 0.0001 \n(Wilcoxon rank sum test)
  7  qsec_posix qsec_posix                    Mean (SD) 19/01/2010 (22.7 hours) 17/01/2010 (1.2 days) 19/01/2010 (2.2 days) 18/01/2010 (1.8 days)                         Difference in means (t-test CI), ref='straight'\nvshaped minus straight: -1.9e+05 [-2.8e+05 to -1.1e+05]                  p value: 0.0001 \n(Two Sample t-test)
  8        surv       surv                          t=0                 1 (0/9)              1 (0/15)               1 (0/8)              1 (0/32)                                                                 Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  9        surv       surv                        t=100               0.4 (5/4)              1 (0/15)               1 (0/8)            0.8 (5/27)                                                                 Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  10       surv       surv Median follow up [min ; max]       258 [120.1 ; 258]     400 [275.8 ; 472]   196.3 [140.8 ; 360]     304 [120.1 ; 472]                                                                 Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)
  11       surv       surv              Median survival                    95.1                  <NA>                  <NA>                  <NA>                                                                 Hazard ratio (Wald CI)\nvshaped vs straight: 0.11 [0.03 to 0.42]                       p value: 0.0002 \n(Logrank test)

Code
  ft_noopt
Output
  a flextable object.
  col_keys: `label`, `variable`, `straight`, `vshaped`, `NA`, `Total`, `effect`, `test` 
  header has 2 row(s) 
  body has 11 row(s) 
  original dataset sample: 
    .id label variable        straight          vshaped NA      Total                                                                                                                           effect                                                   test
  1 cyl   cyl        4 7 (87.5%, 100%)  1 (12.5%, 7.7%)  2   10 (37%) Odds ratio [70% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0.00e+00 to NA]\n8 vs 4: 5.98e+09 [1.27e-79 to 2.72e+247] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
  2 cyl   cyl        6               0   1 (100%, 7.7%)  3  4 (14.8%) Odds ratio [70% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0.00e+00 to NA]\n8 vs 4: 5.98e+09 [1.27e-79 to 2.72e+247] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
  3 cyl   cyl        8               0 11 (100%, 84.6%)  2 13 (48.1%) Odds ratio [70% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0.00e+00 to NA]\n8 vs 4: 5.98e+09 [1.27e-79 to 2.72e+247] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
  4 cyl   cyl       NA               2                2  1          5 Odds ratio [70% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0.00e+00 to NA]\n8 vs 4: 5.98e+09 [1.27e-79 to 2.72e+247] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
  5 cyl   cyl    Total       9 (37.5%)       15 (62.5%)  8  32 (100%) Odds ratio [70% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0.00e+00 to NA]\n8 vs 4: 5.98e+09 [1.27e-79 to 2.72e+247] p value: 0.0001 \n(Fisher's Exact Test for Count Data)
Code
  ft_opt
Output
  a flextable object.
  col_keys: `variable`, `straight`, `vshaped`, `NA`, `Total`, `effect`, `test` 
  header has 2 row(s) 
  body has 15 row(s) 
  original dataset sample: 
     variable        straight          vshaped NA      Total                                                                                                                           effect             test
  1 cyl (cyl)                                                Odds ratio [70% Wald CI], ref='vshaped vs straight'\n6 vs 4: 5.98e+09 [0.00e+00 to NA]\n8 vs 4: 5.98e+09 [1.27e-79 to 2.72e+247] p value: 0.0001 
  2         4 7 (87.5%, 100%)  1 (12.5%, 7.7%)  2   10 (37%)                                                                                                                                                  
  3         6               0   1 (100%, 7.7%)  3  4 (14.8%)                                                                                                                                                  
  4         8               0 11 (100%, 84.6%)  2 13 (48.1%)                                                                                                                                                  
  5        NA               2                2  1          5