csSAM: csSAM - cell-specific Significance Analysis of Microarrays

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Cell-type specific differential expression of a microarray experiment of heterogeneous tissue samples, using SAM.

Author
Shai Shen-Orr, Rob Tibshirani, Narasimhan Balasubramanian, David Wang
Date of publication
2013-05-13 17:39:59
Maintainer
Shai Shen-Orr <shenorr@technion.ac.il>
License
LGPL
Version
1.2.4

View on CRAN

Man pages

csfit
csfit: Deconvolution from Known Cell Proportions
csSAM
csSAM
csSAM-internal
Internal csSAM functions
csSAM-package
Cell-specific Differential Expression (csSAM)
csSamWrapper
csSamWrapper function - performs entire functionality
fdrCsSAM
fdrCsSAM
fdrSAM
fdrSAM
findSigGene
findSigGene
plotCsSAM
plotcsSAM
runSAM
runSAM

Files in this package

csSAM
csSAM/MD5
csSAM/test.html
csSAM/man
csSAM/man/runSAM.Rd
csSAM/man/plotCsSAM.Rd
csSAM/man/findSigGene.Rd
csSAM/man/fdrSAM.Rd
csSAM/man/fdrCsSAM.Rd
csSAM/man/csfit.Rd
csSAM/man/csSamWrapper.Rd
csSAM/man/csSAM.Rd
csSAM/man/csSAM-package.Rd
csSAM/man/csSAM-internal.Rd
csSAM/inst
csSAM/inst/REFERENCES.bib
csSAM/R
csSAM/R/varr.R
csSAM/R/ttest.func.R
csSAM/R/runSAM.R
csSAM/R/plotCsSAM.R
csSAM/R/make.monotone.R
csSAM/R/findSigGene.R
csSAM/R/fdrSAM.R
csSAM/R/fdrCsSAM.R
csSAM/R/csfit.R
csSAM/R/csSamWrapper.R
csSAM/R/csSAM.R
csSAM/R/csSAM-package.R
csSAM/NEWS
csSAM/NAMESPACE
csSAM/DESCRIPTION