Description Usage Arguments Author(s) References
Plots the # of genes called significnat at a given false disocvery rate for the SAM (heterogenous tissue) comparison, and for each of the contrasted cell-types using csSAM
1 2 | plotCsSAM(csSAMdata, SAMdata, alternative, cellID,
numcell, fileName)
|
csSAMdata |
List object output of the fdrCsSAM function |
SAMdata |
List object output of the fdrSAM function |
alternative |
Type of test conducted. Will appear in plot title. |
cellID |
Label for each cell-type |
numcell |
Number of different cell-types being considered. |
fileName |
Name of output pdf file. |
Shai Shen-Orr, Rob Tibshirani, Narasimhan Balasubramanian, David Wang
Shen-Orr SS, Tibshirani R, Khatri P, Bodian DL, Staedtler F, Perry NM, Hastie T, Sarwal MM, Davis MM and Butte AJ (2010). "Cell type-specific gene expression differences in complex tissues." _Nature methods_, *7*(4), pp. 287-9. ISSN 1548-7105, <URL: http://dx.doi.org/10.1038/nmeth.1439>, <URL: http://www.ncbi.nlm.nih.gov/pubmed/20208531>.
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