ctmcmove: Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
Version 1.2.8

Software to facilitates taking movement data in xyt format and pairing it with raster covariates within a continuous time Markov chain (CTMC) framework. As described in Hanks et al. (2015) , this allows flexible modeling of movement in response to covariates (or covariate gradients) with model fitting possible within a Poisson GLM framework.

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AuthorEphraim Hanks
Date of publication2017-04-04 17:43:34 UTC
MaintainerEphraim Hanks <hanks@psu.edu>
LicenseGPL-2
Version1.2.8
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ctmcmove")

Man pages

ctmc2glm: Convert a "ctmc" object into Poisson glm format.
ctmcmove-package: ctmcmove
ctmc.sim: Code to simulate a continuous-time Markov chain.
get.rate.matrix: Create a CTMC rate matrix from rasters and parameter...
get.UD: Find the stationary distribution of the CTMC.
mcmc.fmove: Fit continuous-time functional movement model to telemetry...
path2ctmc: Function to turn a discrete-time continuous-space path into a...
Pctmc: Transition Matrix of a CTMC.
rast.grad: Creates gradient rasters from a raster object.
seal: Data for one foraging trip by a male northern fur seal (NFS).

Functions

Pctmc Man page Source code
ctmc.sim Man page Source code
ctmc2glm Man page Source code
ctmcmove Man page
ctmcmove-package Man page
get.UD Man page Source code
get.rate.matrix Man page Source code
mcmc.fmove Man page Source code
path2ctmc Man page Source code
rast.grad Man page Source code
seal Man page

Files

NAMESPACE
data
data/seal.rda
R
R/Pctmc.R
R/get.UD.R
R/ctmc.sim.R
R/ctmc2glm.R
R/path2ctmc.R
R/get.rate.matrix.R
R/rast.grad.R
R/mcmc.fmove.R
MD5
build
build/partial.rdb
DESCRIPTION
man
man/ctmc2glm.Rd
man/ctmc.sim.Rd
man/get.UD.Rd
man/get.rate.matrix.Rd
man/seal.Rd
man/path2ctmc.Rd
man/ctmcmove-package.Rd
man/mcmc.fmove.Rd
man/Pctmc.Rd
man/rast.grad.Rd
ctmcmove documentation built on May 20, 2017, 12:20 a.m.