Description Usage Arguments Details Value Author(s) References Examples

Simulates a CTMC with given rate matrix (Q) for a time (T), or until it reaches a final absorbing state.

1 |

`Q` |
A square matrix. Either a rate matrix or the infinitessimal generator of the CTMC. |

`start.state` |
An integer - the starting state for the simulation. |

`T` |
A numeric value greater than zero. The time window for simulating the CTMC will be [0,T]. |

`final.state` |
Either NA or an integer. If an integer, the chain will be simulated until it enters the "final.state", at which time the simulation will be terminated. |

This code uses the Gillespie algorithm to simulate a CTMC path in continuous time.

`ec` |
A vector of the sequential grid cells (the embedded chain) in the CTMC movement path |

`rt` |
A vector of residence times in each sequential grid cell in the CTMC movement path |

Ephraim M. Hanks

None

1 2 3 | ```
## For example code, do
##
## > help(ctmcMove)
``` |

```
Loading required package: raster
Loading required package: sp
Loading required package: Matrix
Loading required package: fda
Loading required package: splines
Attaching package: 'fda'
The following object is masked from 'package:graphics':
matplot
Loading required package: gdistance
Loading required package: igraph
Attaching package: 'igraph'
The following object is masked from 'package:raster':
union
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Attaching package: 'gdistance'
The following object is masked from 'package:igraph':
normalize
```

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