Files in ctsmTMB

Continuous Time Stochastic Modelling using Template Model Builder

NEWS.md README.md R/RcppExports.R R/EKF_functions.R R/data_functions.R R/compile_functions.R R/LAPLACE2_functions.R R/LKF_functions.R R/methods.R R/simulate_functions.R R/UKF_functions.R R/ctsmTMB.R R/zzz_dynlib.R R/data.R R/flags_and_rebuild.R R/model_function_strings.R R/build_functions.R R/predict_functions.R R/zzz_hacks.R R/deriv_funs.R R/backup.R R/estimate_functions.R R/rcpp_estimate_test.R R/new_functions.R R/check_functions.R R/LAPLACE_functions.R R/zzz_imports.R R/utils.R inst/doc/observation_equations.Rmd inst/doc/observation_equations.R inst/doc/extended_kalman_filter.Rmd inst/doc/using_another_optimizer.R inst/doc/predict.Rmd inst/doc/unscented_kalman_filter.Rmd inst/doc/ctsmTMB.R inst/doc/simulate.R inst/doc/predict.R inst/doc/simulate.Rmd inst/doc/laplace_approx.Rmd inst/doc/ctsmTMB.Rmd inst/doc/estimate.R inst/doc/using_another_optimizer.Rmd inst/doc/estimate.Rmd inst/doc/linear_kalman_filter.Rmd tests/testthat.R tests/testthat/test-first.R vignettes/observation_equations.Rmd vignettes/extended_kalman_filter.Rmd vignettes/predict.Rmd vignettes/unscented_kalman_filter.Rmd vignettes/simulate.Rmd vignettes/laplace_approx.Rmd vignettes/ctsmTMB.Rmd vignettes/using_another_optimizer.Rmd vignettes/estimate.Rmd vignettes/linear_kalman_filter.Rmd man/Ornstein.Rd man/plot.ctsmTMB.fit.Rd man/print.ctsmTMB.Rd man/print.ctsmTMB.fit.Rd man/plot.ctsmTMB.profile.Rd man/profile.ctsmTMB.fit.Rd man/summary.ctsmTMB.fit.Rd man/ctsmTMB.Rd man/ctsm.Rd man/plot.ctsmTMB.pred.Rd