cvxbiclustr: Convex Biclustering Algorithm
Version 0.0.1

An iterative algorithm for solving a convex formulation of the biclustering problem.

Browse man pages Browse package API and functions Browse package files

AuthorEric C. Chi, Genevera I. Allen, Richard G. Baraniuk
Date of publication2015-06-28 12:56:52
MaintainerEric C. Chi <ecchi1105@gmail.com>
LicenseMIT + file LICENSE
Version0.0.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("cvxbiclustr")

Man pages

biclust_smooth: Bicluster Smooth
cobra: Convex Biclustering Algorithm
cobra_internal: Convex Biclustering via Dykstra-like Proximal Algorithm
cobra_pod: MM algorithm for Convex Biclustering with Missing Data
cobra_validate: Perform validation to select regularization parameter
compactify_edges: Construct indices matrices
convert: Convert weights, as COO matrix, to CSC matrix and weights...
create_adjacency: Create adjacency matrix from V
create_edge_incidence: Edge-Incidence Matrix of Weights Graph
find_clusters: Find clusters
get_subgroup_means: Get Subgroup Means
get_subgroup_means_full: Get Subgroup Means
get_validation: Select Validation Set for a Matrix
gkn_weights: Gaussian Kernel + k-Nearest Neighbor Weights
kernel_weights: Compute Gaussian Kernel Weights
knn_weights: "Thin" a weight vector to be positive only for its k-nearest...
lung: Lung cancer data
weights_graph: Weights Graph Adjacency Matrix

Functions

biclust_smooth Man page Source code
cobra Man page Source code
cobra_internal Man page Source code
cobra_pod Man page Source code
cobra_validate Man page Source code
compactify_edges Man page Source code
convert Man page Source code
create_adjacency Man page Source code
create_edge_incidence Man page Source code
find_clusters Man page Source code
get_subgroup_means Man page Source code
get_subgroup_means_full Man page Source code
get_validation Man page Source code
gkn_weights Man page Source code
kernel_weights Man page Source code
knn_weights Man page Source code
lung Man page
tri2vec Source code
vec2tri Source code
weights_graph Man page Source code

Files

src
src/cvxbiclustr.c
NAMESPACE
data
data/lung.rda
R
R/lung.r
R/cobra.r
R/cobra_validate.r
R/util.r
R/cobra_pod.r
MD5
DESCRIPTION
man
man/gkn_weights.Rd
man/create_edge_incidence.Rd
man/kernel_weights.Rd
man/biclust_smooth.Rd
man/convert.Rd
man/cobra_internal.Rd
man/cobra_pod.Rd
man/create_adjacency.Rd
man/lung.Rd
man/cobra_validate.Rd
man/find_clusters.Rd
man/get_validation.Rd
man/get_subgroup_means.Rd
man/weights_graph.Rd
man/cobra.Rd
man/knn_weights.Rd
man/get_subgroup_means_full.Rd
man/compactify_edges.Rd
LICENSE
cvxbiclustr documentation built on May 19, 2017, 10:55 p.m.