cvxbiclustr: Convex Biclustering Algorithm

An iterative algorithm for solving a convex formulation of the biclustering problem.

Author
Eric C. Chi, Genevera I. Allen, Richard G. Baraniuk
Date of publication
2015-06-28 12:56:52
Maintainer
Eric C. Chi <ecchi1105@gmail.com>
License
MIT + file LICENSE
Version
0.0.1

View on CRAN

Man pages

biclust_smooth
Bicluster Smooth
cobra
Convex Biclustering Algorithm
cobra_internal
Convex Biclustering via Dykstra-like Proximal Algorithm
cobra_pod
MM algorithm for Convex Biclustering with Missing Data
cobra_validate
Perform validation to select regularization parameter
compactify_edges
Construct indices matrices
convert
Convert weights, as COO matrix, to CSC matrix and weights...
create_adjacency
Create adjacency matrix from V
create_edge_incidence
Edge-Incidence Matrix of Weights Graph
find_clusters
Find clusters
get_subgroup_means
Get Subgroup Means
get_subgroup_means_full
Get Subgroup Means
get_validation
Select Validation Set for a Matrix
gkn_weights
Gaussian Kernel + k-Nearest Neighbor Weights
kernel_weights
Compute Gaussian Kernel Weights
knn_weights
"Thin" a weight vector to be positive only for its k-nearest...
lung
Lung cancer data
weights_graph
Weights Graph Adjacency Matrix

Files in this package

cvxbiclustr
cvxbiclustr/src
cvxbiclustr/src/cvxbiclustr.c
cvxbiclustr/NAMESPACE
cvxbiclustr/data
cvxbiclustr/data/lung.rda
cvxbiclustr/R
cvxbiclustr/R/lung.r
cvxbiclustr/R/cobra.r
cvxbiclustr/R/cobra_validate.r
cvxbiclustr/R/util.r
cvxbiclustr/R/cobra_pod.r
cvxbiclustr/MD5
cvxbiclustr/DESCRIPTION
cvxbiclustr/man
cvxbiclustr/man/gkn_weights.Rd
cvxbiclustr/man/create_edge_incidence.Rd
cvxbiclustr/man/kernel_weights.Rd
cvxbiclustr/man/biclust_smooth.Rd
cvxbiclustr/man/convert.Rd
cvxbiclustr/man/cobra_internal.Rd
cvxbiclustr/man/cobra_pod.Rd
cvxbiclustr/man/create_adjacency.Rd
cvxbiclustr/man/lung.Rd
cvxbiclustr/man/cobra_validate.Rd
cvxbiclustr/man/find_clusters.Rd
cvxbiclustr/man/get_validation.Rd
cvxbiclustr/man/get_subgroup_means.Rd
cvxbiclustr/man/weights_graph.Rd
cvxbiclustr/man/cobra.Rd
cvxbiclustr/man/knn_weights.Rd
cvxbiclustr/man/get_subgroup_means_full.Rd
cvxbiclustr/man/compactify_edges.Rd
cvxbiclustr/LICENSE