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cytometree: Automated Cytometry Gating and Annotation
Given the hypothesis of a bi-modal distribution of cells for each marker, the algorithm constructs a binary tree, the nodes of which are subpopulations of cells. At each node, observed cells and markers are modeled by both a family of normal distributions and a family of bi-modal normal mixture distributions. Splitting is done according to a normalized difference of AIC between the two families. Method is detailed in: Commenges, Alkhassim, Gottardo, Hejblum & Thiebaut (2018) <doi: 10.1002/cyto.a.23601>.
Package details |
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| Author | Chariff Alkhassim [aut], Boris P Hejblum [cre, aut], Anthony Devaux [aut], Van Hung Huynh Tran [aut], Melany Durand [aut] |
| Maintainer | Boris P Hejblum <boris.hejblum@u-bordeaux.fr> |
| License | LGPL-3 | file LICENSE |
| Version | 2.0.6 |
| URL | https://sistm.github.io/cytometree/ https://github.com/sistm/Cytometree/ |
| Package repository | View on CRAN |
| Installation |
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