Automated Cytometry Gating and Annotation

Annotation | Annotates cell populations found using CytomeTree. |

BinaryTree | Builds a binary tree. |

bootstrapCI | Bootstrapped Confidence Interval. |

CytEM | E-M algorithm. |

CytomeTree | Binary tree algorithm for cytometry data analysis. |

cytometree-package | Binary tree algorithm for cytometry data analysis. |

DLBCL | Diffuse large B-cell lymphoma data set from the FlowCAP-I... |

FmeasureC | C++ implementation of the F-measure computation |

FmeasureC_no0 | C++ implementation of the F-measure computation without the... |

GaussMix | Bi-modal normal mixture distribution. |

GaussMix2 | tri-modal normal mixture distribution. |

HIPC | HIPC T cell data set from HIPC program, patient 12828. The... |

KmeansOPT | Finds the partition which minimize the within-leaves sum of... |

LeavesCenters | Computes means of leaves given cytomeTreeObj. |

Partition2gr | Computes N-1 possible partitions of N into 2 subsets. |

Partition3gr | Computes (N-1)*(N-2) possible partitions of N into 3 subsets. |

plot_cytopop | Plot the cell count for each population using CytomeTree. |

plot_graph | Plot the binary tree built using CytomeTree. |

plot_nodes | Plot the distribution of the observed cells at each node of... |

RetrievePops | Retrieve cell populations found using Annotation. |

TreeAnnot | Returns the underlying annotation given a tree pattern. |

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