dae: Functions Useful in the Design and ANOVA of Experiments

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The content falls into the following groupings: (i) Data, (ii) Factor manipulation functions, (iii) Design functions, (iv) ANOVA functions, (v) Matrix functions, (vi) Projector and canonical efficiency functions, and (vii) Miscellaneous functions. A document 'daeDesignRandomization.pdf', available in the doc subdirectory of the installation directory for 'dae', describes the use of the package for generating randomized layouts for experiments. The ANOVA functions facilitate the extraction of information when the 'Error' function has been used in the call to 'aov'.

Author
Chris Brien <Chris.Brien@unisa.edu.au>.
Date of publication
2016-09-16 07:13:37
Maintainer
Chris Brien <Chris.Brien@unisa.edu.au>
License
GPL (>= 2)
Version
2.7-20
URLs

View on CRAN

Man pages

ABC.Interact.dat
Randomly generated set of values indexed by three factors
Ameasures
Calculates the A-optimality measures from the variance matrix...
as.numfac
Convert a factor to a numeric vector
blockboundary.plot
This function plots a block boundary on a plot produced by...
blockboundaryPlot
This function plots a block boundary on a plot produced by...
correct.degfree
Check the degrees of freedom in an object of class projector
dae-deprecated
Deprecated Functions in Package dae
dae-package
\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("dae")}
decomp.relate
Examines the relationship between the eigenvectors for two...
degfree
Degrees of freedom extraction and replacement
designLatinSqrSys
Generate a systematic plan for a Latin Square design
design.plot
This function plots treatments within a matrix. It is being...
designPlot
This function is used to give a graphical representation of...
detect.diff
Computes the detectable difference for an experiment
efficiencies.p2canon
Extracts the canonical efficiency factors from a list of...
efficiencies.pcanon
Extracts the canonical efficiency factors from a list of...
efficiency.criteria
Computes efficiency criteria from a set of efficiency factors
elements
Extract the elements of an array specified by the subscripts
extab
Expands the values in table to a vector
Fac4Proc.dat
Data for a 2^4 factorial experiment
fac.ar1mat
forms the ar1 correlation matrix for a (generalized) factor
fac.combine
Combines several factors into one
fac.divide
Divides a factor into several individual factors
fac.gen
Generate all combinations of several factors
fac.layout
Generate a randomized layout for an experiment
fac.match
Match, for each combination of a set of columns in 'x', the...
fac.meanop
computes the projection matrix that produces means
fac.nested
creates a factor whose values are generated within those of...
fac.recode
Recodes factor 'levels' using values in a vector. The values...
fac.sumop
computes the summation matrix that produces sums...
fac.vcmat
forms the variance matrix for the variance component of a...
fitted.aovlist
Extract the fitted values for a fitted model from an aovlist...
fitted.errors
Extract the fitted values for a fitted model
get.daeTolerance
Gets the value of daeTolerance for the package dae
harmonic.mean
Calcuates the harmonic mean.
interaction.ABC.plot
Plots an interaction plot for three factors
is.allzero
Tests whether all elements are approximately zero
is.projector
Tests whether an object is a valid object of class projector
mat.ar1
Forms an ar1 correlation matrix
mat.ar2
Forms an ar2 correlation matrix
mat.ar3
Forms an ar3 correlation matrix
mat.arma
Forms an arma correlation matrix
mat.banded
Form a banded matrix from a vector of values
mat.dirprod
Forms the direct product of two matrices
mat.dirsum
Forms the direct sum of a list of matrices
mat.exp
Forms an exponential correlation matrix
mat.I
Forms a unit matrix
mat.J
Forms a square matrix of ones
mat.ma1
Forms an ma1 correlation matrix
mat.ma2
Forms an ma2 correlation matrix
mat.sar2
Forms an sar2 correlation matrix
mat.Vpred
Calculates the variances of a set of predicted effects from a...
meanop
computes the projection matrix that produces means
mpone
Converts the first two levels of a factor into the numeric...
no.reps
Computes the number of replicates for an experiment
power.exp
Computes the power for an experiment
print.projector
Print projectors
print.summary.p2canon
Prints the values in an 'summary.p2canon' object
print.summary.pcanon
Prints the values in an 'summary.pcanon' object
proj2.combine
Compute the projection and Residual operators for two,...
proj2.efficiency
Computes the canonical efficiency factors for the joint...
proj2.eigen
Canonical efficiency factors and eigenvectors in joint...
projector
Create projectors
projector-class
Class projector
projs.2canon
A canonical analysis of the relationships between two sets of...
projs.canon
A canonical analysis of the relationships between sets of...
projs.combine.p2canon
Extract, from a p2canon object, the projectors that give the...
projs.structure
orthogonalized projectors for the terms in a formula
qqyeffects
Half or full normal plot of Yates effects
resid.errors
Extract the residuals for a fitted model
residuals.aovlist
Extract the residuals from an aovlist object
rmvnorm
generates a vector of random values from a multivariate...
Sensory3Phase.dat
Data for the three-pahse sensory evaluation experiment in...
set.daeTolerance
Sets the values of daeTolerance for the package dae
show-methods
Methods for Function show in Package dae
SPLGrass.dat
Data for an experiment to investigate the effects of grazing...
strength
Generate paper strength values
summary.p2canon
Summarize a canonical analysis of the relationships between...
summary.pcanon
Summarize a canonical analysis of the relationships between...
tukey.1df
Performs Tukey's one-degree-of-freedom-test-for-nonadditivity
yates.effects
Extract Yates effects

Files in this package

dae
dae/inst
dae/inst/NEWS.Rd
dae/inst/doc
dae/inst/doc/dae-manual.pdf
dae/inst/doc/daeDesignRandomization.pdf
dae/NAMESPACE
dae/data
dae/data/Fac4Proc.dat.rda
dae/data/SPLGrass.dat.rda
dae/data/Sensory3Phase.dat.rda
dae/data/ABC.Interact.dat.rda
dae/R
dae/R/fac.layout.r
dae/R/NoReps.r
dae/R/design.r
dae/R/fac.gen.r
dae/R/proj.r
dae/R/proj.canon.v5.r
dae/R/dae.utilties.r
dae/R/fac.functions.r
dae/R/harmonic.mean.r
dae/R/strength.r
dae/R/fac.match.r
dae/R/extab.r
dae/R/mat.functions.r
dae/R/designPlot.r
dae/R/qqnorm.yeffects.r
dae/R/projs.canon.v4.r
dae/R/design.plot.r
dae/R/Interaction.ABC.Plot.r
dae/R/rmvnorm.r
dae/R/fac.matop.r
dae/R/qqyeffects.r
dae/R/diagnostic.checking.r
dae/MD5
dae/build
dae/build/partial.rdb
dae/DESCRIPTION
dae/man
dae/man/as.numfac.Rd
dae/man/rmvnorm.Rd
dae/man/blockboundaryPlot.Rd
dae/man/mat.dirsum.Rd
dae/man/proj2.eigen.Rd
dae/man/yates.effects.Rd
dae/man/proj2.combine.Rd
dae/man/mat.J.Rd
dae/man/residuals.aovlist.Rd
dae/man/harmonic.mean.Rd
dae/man/qqyeffects.Rd
dae/man/fac.sumop.Rd
dae/man/decomp.relate.Rd
dae/man/mat.ma2.Rd
dae/man/fac.match.Rd
dae/man/mat.ar1.Rd
dae/man/Fac4Proc.dat.Rd
dae/man/mat.sar2.Rd
dae/man/projector.Rd
dae/man/dae-package.Rd
dae/man/Ameasures.Rd
dae/man/designPlot.Rd
dae/man/mat.ar3.Rd
dae/man/projs.canon.Rd
dae/man/proj2.efficiency.Rd
dae/man/projs.combine.p2canon.Rd
dae/man/tukey.1df.Rd
dae/man/fitted.aovlist.Rd
dae/man/design.plot.Rd
dae/man/efficiencies.pcanon.Rd
dae/man/fac.nested.Rd
dae/man/fac.recode.Rd
dae/man/fac.combine.Rd
dae/man/fac.vcmat.Rd
dae/man/print.summary.pcanon.Rd
dae/man/projs.structure.Rd
dae/man/print.summary.p2canon.Rd
dae/man/ABC.Interact.dat.Rd
dae/man/mat.I.Rd
dae/man/fac.divide.Rd
dae/man/fac.ar1mat.Rd
dae/man/Sensory3Phase.dat.Rd
dae/man/blockboundary.plot.Rd
dae/man/mat.ma1.Rd
dae/man/is.allzero.Rd
dae/man/SPLGrass.dat.Rd
dae/man/fac.gen.Rd
dae/man/designLatinSqrSys.Rd
dae/man/interaction.ABC.plot.Rd
dae/man/projs.2canon.Rd
dae/man/elements.Rd
dae/man/degfree.Rd
dae/man/summary.p2canon.Rd
dae/man/mat.exp.Rd
dae/man/extab.Rd
dae/man/mat.banded.Rd
dae/man/fitted.errors.Rd
dae/man/efficiency.criteria.Rd
dae/man/mat.ar2.Rd
dae/man/detect.diff.Rd
dae/man/projector-class.Rd
dae/man/get.daeTolerance.Rd
dae/man/is.projector.Rd
dae/man/mat.dirprod.Rd
dae/man/mat.arma.Rd
dae/man/mpone.Rd
dae/man/meanop.Rd
dae/man/resid.errors.Rd
dae/man/dae-deprecated.Rd
dae/man/print.projector.Rd
dae/man/efficiencies.p2canon.Rd
dae/man/fac.meanop.Rd
dae/man/fac.layout.Rd
dae/man/correct.degfree.Rd
dae/man/power.exp.Rd
dae/man/set.daeTolerance.Rd
dae/man/strength.Rd
dae/man/no.reps.Rd
dae/man/show-methods.Rd
dae/man/mat.Vpred.Rd
dae/man/summary.pcanon.Rd