gl2faststructure: Converts a genlight object into faststructure format (to run...

In dartR.base: Analysing 'SNP' and 'Silicodart' Data - Basic Functions

Converts a genlight object into faststructure format (to run faststructure elsewhere)

Description

Recodes in the quite specific faststructure format (e.g first six columns need to be there, but are ignored...check faststructure documentation (if you find any :-( ))) The script writes out the a file in faststructure format.

Usage

gl2faststructure(
  x,
  outfile = "gl.str",
  outpath = NULL,
  probar = FALSE,
  verbose = NULL
)

Arguments

x	Name of the genlight object containing the SNP data [required].
outfile	File name of the output file (including extension) [default "gl.str"].
outpath	Path where to save the output file [default global working directory or if not specified, tempdir()].
probar	Switch to show/hide progress bar [default FALSE].
verbose	Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2 or as specified using gl.set.verbosity].

Value

returns no value (i.e. NULL)

Author(s)

Bernd Gruber (Post to https://groups.google.com/d/forum/dartr)

See Also

Other linker: gl2bayesAss(), gl2bayescan(), gl2bpp(), gl2demerelate(), gl2eigenstrat(), gl2gds(), gl2genalex(), gl2genepop(), gl2geno(), gl2gi(), gl2hiphop(), gl2phylip(), gl2plink(), gl2related(), gl2sa(), gl2structure(), gl2treemix(), gl2vcf()

dartR.base documentation built on April 4, 2025, 2:45 a.m.