gl2dartR: Convert a genlight object to a dartR object

In dartR: Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis

Convert a genlight object to a dartR object

Description

This function converts a 'genlight' object into a 'dartR' object by changing its class attribute. It is used to convert legacy data sets to the new dartR format.

Usage

gl2dartR(x, filename = NULL, file.path = tempdir())

Arguments

x	An object of class 'genlight' to be converted.
filename	A character string specifying the name of the file to save the converted object. [default is gl.rds]
file.path	A character string specifying the path to save the file.

Value

The input object with class changed to '"dartR"' and its package attribute set to '"dartR.base"'.

Examples

simgl <- glSim(10, 100, ploidy = 2, indnames=1:10, locnames=1:100)  # Simulating a genlight object
simgl <- gl2dartR(simgl)
pop(simgl)<- rep("A",10)
indNames(simgl) <- paste0("ind",1:10)
gl.smearplot(simgl, verbose=0)

dartR documentation built on April 4, 2025, 12:23 a.m.