API for dartR
Importing and Analysing SNP and Silicodart Data Generated by Genome-Wide Restriction Fragment Analysis

Global functions
EffectiveNumberSamplesMLE Source code
FstDistPlotter Source code
FstDistPlotterAddBadCurve Source code
FstDistPlotterZoom Source code
IncompleteGammaFunction Source code
OutFLANKBadCurvePlotter Source code
WC_FST_Diploids_2Alleles Source code
WC_FST_FiniteSample_Diploids_2Alleles Source code
WC_FST_FiniteSample_Diploids_2Alleles_NoCorr Source code
WC_FST_FiniteSample_Haploids_2AllelesB_MCW Source code
WC_FST_FiniteSample_Haploids_2AllelesB_NoSamplingCorrection Source code
dart2genlight Man page Source code
foxes.gl Man page
fstBarCalculator Source code
fstBarCalculatorNoCorr Source code
getFSTs_diploids Source code
gi2gl Man page Source code
gl.Ho Man page Source code
gl.Hs Man page Source code
gl.alf Man page Source code
gl.amova Man page Source code
gl.assign Man page Source code
gl.basic.stats Man page Source code
gl.collapse Man page Source code
gl.collapse.pval Man page Source code
gl.collapse.recursive Man page Source code
gl.costdistances Man page Source code
gl.define.pop Man page Source code
gl.dist.heatmap Man page Source code
gl.dist.pop Man page Source code
gl.diversity Man page Source code
gl.drop.ind Man page Source code
gl.drop.loc Man page Source code
gl.drop.pop Man page Source code
gl.edit.recode.ind Man page Source code
gl.edit.recode.pop Man page Source code
gl.filter.callrate Man page Source code
gl.filter.cloneid Man page Source code
gl.filter.hamming Man page Source code
gl.filter.hwe Man page Source code
gl.filter.maf Man page Source code
gl.filter.monomorphs Man page Source code
gl.filter.repavg Man page Source code
gl.filter.secondaries Man page Source code
gl.fixed.diff Man page Source code
gl.fst.pop Man page Source code
gl.gene.freq Man page Source code
gl.genleastcost Man page Source code
gl.grm Man page Source code
gl.grm.network Man page Source code
gl.hwe.pop Man page Source code
gl.ibd Man page Source code
gl.keep.ind Man page Source code
gl.keep.pop Man page Source code
gl.make.recode.ind Man page Source code
gl.make.recode.pop Man page Source code
gl.map.interactive Man page Source code
gl.merge.pop Man page Source code
gl.nhybrids Man page Source code
gl.outflank Man page Source code
gl.pcoa Man page Source code
gl.pcoa.plot Man page Source code
gl.pcoa.plot.3d Man page Source code
gl.pcoa.pop Man page Source code
gl.pcoa.scree Man page Source code
gl.percent.freq Man page Source code
gl.plot Man page Source code
gl.read.dart Man page Source code
gl.read.dart.2row Man page Source code
gl.read.silicodart Man page Source code
gl.recalc.metrics Man page Source code
gl.recode.ind Man page Source code
gl.recode.pop Man page Source code
gl.report.bases Man page Source code
gl.report.callrate Man page Source code
gl.report.hamming Man page Source code
gl.report.heterozygosity Man page Source code
gl.report.hwe Man page Source code
gl.report.ld Man page Source code
gl.report.maf Man page Source code
gl.report.monomorphs Man page Source code
gl.report.pa Man page Source code
gl.report.pa.pop Man page Source code
gl.report.repavg Man page Source code
gl.report.secondaries Man page Source code
gl.sexlinkage Man page Source code
gl.sim.ind Man page Source code
gl.sim.offspring Man page Source code
gl.subsample.loci Man page Source code
gl.tree.nj Man page Source code
gl.utils.fdsim Man page Source code
gl.write.csv Man page Source code
gl2demerelate Man page Source code
gl2fasta Man page Source code
gl2faststructure Man page Source code
gl2gds Man page Source code
gl2gi Man page Source code
gl2phylip Man page Source code
gl2plink Man page Source code
gl2sa Man page Source code
gl2shp Man page Source code
gl2snapp Man page Source code
gl2structure Man page Source code
gl2svdquartets Man page Source code
gl2treemix Man page Source code
is.fixed Man page Source code
negLLdfFstTrim Source code
outputDFStarterNoCorr Source code
pOutlierFinderChiSqNoCorr Source code
pTwoSidedFromChiSq Source code
platy Man page
possums.gl Man page
prob.hwe Man page Source code
read.dart Man page Source code
testset.gl Man page
testset_SNPs_2Row Man page
testset_metadata Man page
testset_pop_recode Man page
util.outflank Man page Source code
util.outflank.MakeDiploidFSTMat Man page Source code
util.outflank.plotter Man page Source code
utils.hamming Man page Source code
utils.hwe Man page Source code
utils.recalc.avgpic Man page Source code
utils.recalc.callrate Man page Source code
utils.recalc.freqhets Man page Source code
utils.recalc.freqhomref Man page Source code
utils.recalc.freqhomsnp Man page Source code
utils.recalc.maf Man page Source code
dartR documentation built on Nov. 26, 2018, 9:06 a.m.