gl.print.history: Prints history of a genlight object

In dartR: Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis

Prints history of a genlight object

Description

Prints history of a genlight object

Usage

gl.print.history(x = NULL, history = NULL)

Arguments

x	A genlight object (with history) [optional].
history	Either a link to a history slot (gl\@other$history), or a vector indicating which part of the history of x is used [c(1,3,4) uses the first, third and forth entry from x\@other$history]. If no history is provided the complete history of x is used (recreating the identical object x) [optional].

Value

Prints a table with all history records. Currently the style cannot be changed.

Author(s)

Bernd Gruber (bugs? Post to https://groups.google.com/d/forum/dartr)

Examples

dartfile <- system.file('extdata','testset_SNPs_2Row.csv', package='dartR')
metadata <- system.file('extdata','testset_metadata.csv', package='dartR')
gl <- gl.read.dart(dartfile, ind.metafile = metadata, probar=FALSE)
gl2 <- gl.filter.callrate(gl, method='loc', threshold=0.9)
gl3 <- gl.filter.callrate(gl2, method='ind', threshold=0.95)
#Now 'replay' part of the history 'onto' another genlight object
#bc.fil <- gl.play.history(gl.compliance.check(bandicoot.gl),
#history=gl3@other$history[c(2,3)], verbose=1)
#gl.print.history(bc.fil)

dartR documentation built on June 8, 2023, 6:48 a.m.