gl.propShared: Calculates a similarity (distance) matrix for individuals on...
In dartR: Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis
View source: R/gl.propShared.r
gl.propShared R Documentation
Calculates a similarity (distance) matrix for individuals on the proportion of
shared alleles
Description
This script calculates an individual based distance matrix. It uses an C++
implementation, so package Rcpp needs to be installed and it is therefore
really fast (once it has compiled the function after the first run).
Usage
gl.propShared(x)
Arguments
x
Name of the genlight containing the SNP genotypes [required].
Value
A similarity matrix
Author(s)
Bernd Gruber (Post to https://groups.google.com/d/forum/dartr)
Examples
#takes some time at the first run of the function...
## Not run:
res <- gl.propShared(bandicoot.gl)
res[1:5,1:7] #show only a small part of the matrix
## End(Not run)
dartR documentation built on June 8, 2023, 6:48 a.m.
R Package Documentation
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View source: R/gl.propShared.r
| gl.propShared | R Documentation |
Calculates a similarity (distance) matrix for individuals on the proportion of shared alleles
Description
This script calculates an individual based distance matrix. It uses an C++ implementation, so package Rcpp needs to be installed and it is therefore really fast (once it has compiled the function after the first run).
Usage
gl.propShared(x)
Arguments
x |
Name of the genlight containing the SNP genotypes [required]. |
Value
A similarity matrix
Author(s)
Bernd Gruber (Post to https://groups.google.com/d/forum/dartr)
Examples
#takes some time at the first run of the function...
## Not run:
res <- gl.propShared(bandicoot.gl)
res[1:5,1:7] #show only a small part of the matrix
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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