platy: Example data set as text file to be imported into a genlight...
In dartR: Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis
platy R Documentation
Example data set as text file to be imported into a genlight object
Description
Check ?read.genetable in pacakge PopGenReport for details on the format.
Format
csv
Author(s)
Bernd Gruber (bugs? Post to
https://groups.google.com/d/forum/dartr
Examples
library(PopGenReport)
read.csv( paste(.libPaths()[1],'/dartR/extdata/platy.csv',sep='' ))
platy <- read.genetable( paste(.libPaths()[1],'/dartR/extdata/platy.csv',
sep='' ), ind=1, pop=2, lat=3, long=4, other.min=5, other.max=6,
oneColPerAll=FALSE, sep='/')
platy.gl <- gi2gl(platy, parallel=FALSE)
df.loc <- data.frame(RepAvg = runif(nLoc(platy.gl)), CallRate = 1)
platy.gl@other$loc.metrics <- df.loc
gl.report.reproducibility(platy.gl)
dartR documentation built on June 8, 2023, 6:48 a.m.
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| platy | R Documentation |
Example data set as text file to be imported into a genlight object
Description
Check ?read.genetable in pacakge PopGenReport for details on the format.
Format
csv
Author(s)
Bernd Gruber (bugs? Post to https://groups.google.com/d/forum/dartr
Examples
library(PopGenReport)
read.csv( paste(.libPaths()[1],'/dartR/extdata/platy.csv',sep='' ))
platy <- read.genetable( paste(.libPaths()[1],'/dartR/extdata/platy.csv',
sep='' ), ind=1, pop=2, lat=3, long=4, other.min=5, other.max=6,
oneColPerAll=FALSE, sep='/')
platy.gl <- gi2gl(platy, parallel=FALSE)
df.loc <- data.frame(RepAvg = runif(nLoc(platy.gl)), CallRate = 1)
platy.gl@other$loc.metrics <- df.loc
gl.report.reproducibility(platy.gl)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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