apply_cut: Applies the datacut based on the datacut flagging variables

In datacutr: SDTM Datacut

Applies the datacut based on the datacut flagging variables

Description

Removes any records where the datacut flagging variable, usually called DCUT_TEMP_REMOVE, is marked as "Y". Also, sets the death related variables in DM (DTHDTC and DTHFL) to missing if the death after datacut flagging variable, usually called DCUT_TEMP_DTHCHANGE, is marked as "Y".

Usage

apply_cut(dsin, dcutvar, dthchangevar)

Arguments

dsin	Name of input dataframe
dcutvar	Name of datacut flagging variable created by pt_cut and date_cut functions - usually called DCUT_TEMP_REMOVE.
dthchangevar	Name of death after datacut flagging variable created by special_dm_cut function - usually called DCUT_TEMP_DTHCHANGE.

Value

Returns the input dataframe, excluding any rows in which dcutvar is flagged as "Y". DTHDTC and DTHFL are set to missing for any records where dthchangevar is flagged as "Y". Any variables with the "DCUT_TEMP" prefix are removed.

Examples

ae <- data.frame(
  USUBJID = c("UXYZ123a", "UXYZ123b", "UXYZ123c", "UXYZ123d"),
  DCUT_TEMP_REMOVE = c("Y", "", "NA", NA)
)
ae_final <- apply_cut(dsin = ae, dcutvar = DCUT_TEMP_REMOVE, dthchangevar = DCUT_TEMP_DTHCHANGE)

dm <- data.frame(
  USUBJID = c("UXYZ123a", "UXYZ123b", "UXYZ123b"),
  DTHDTC = c("2014-10-20", "2014-10-21", "2013-09-08"),
  DTHFL = c("Y", "Y", "Y"),
  DCUT_TEMP_REMOVE = c(NA, NA, "Y"),
  DCUT_TEMP_DTHCHANGE = c(NA, "Y", "")
)
dm_final <- apply_cut(dsin = dm, dcutvar = DCUT_TEMP_REMOVE, dthchangevar = DCUT_TEMP_DTHCHANGE)

datacutr documentation built on March 31, 2023, 10:33 p.m.