Fits Bayesian additive regression trees (BART) while allowing the updating of predictors or response so that BART can be incorporated as a conditional model in a Gibbs/MH sampler. Also serves as a drop-in replacement for package 'BayesTree'.
| Author | Vincent Dorie Developer [aut, cre], Hugh Chipman Developer [aut], Robert McCulloch Developer [aut] |
| Date of publication | 2016-11-02 19:53:57 |
| Maintainer | Vincent Dorie Developer <vdorie@gmail.com> |
| License | GPL (>= 2) |
| Version | 0.8-7 |
| URL | https://github.com/vdorie/dbarts |
| Package repository | View on CRAN |
| Installation | Install the latest version of this package by entering the following in R:
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All man pages Function index File listing
Man pages | |
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| bart: Bayesian Additive Regression Trees | |
| dbarts: Discrete Bayesian Additive Regression Trees Sampler | |
| dbartsControl: Discrete Bayesian Additive Regression Trees Sampler Control | |
| dbartsData: Discrete Bayesian Additive Regression Trees Sampler Data | |
| dbartsSampler-class: Class "dbartsSampler" of Discrete Bayesian Additive... | |
| guessNumCores: Guess Number of Cores | |
| makeind: Make Model Matrix from Data Frame | |
| pdbart: Partial Dependence Plots for BART | |
| xbart: Crossvalidation For Bayesian Additive Regression Trees | |
Functions |
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Files | |
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TODO
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inst
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inst/CITATION
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inst/NEWS.Rd
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inst/common
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| inst/common/probitData.R | |
| inst/common/friedmanData.R | |
| inst/common/multithreadData.R | |
| inst/common/hillData.R | |
| inst/common/almostLinearBinaryData.R | |
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inst/include
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inst/include/dbarts
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inst/include/dbarts/control.hpp
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inst/include/dbarts/model.hpp
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inst/include/dbarts/data.hpp
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inst/include/dbarts/types.hpp
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inst/include/dbarts/cstdint.hpp
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inst/include/dbarts/bartFit.hpp
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inst/include/dbarts/state.hpp
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inst/include/dbarts/results.hpp
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inst/include/dbarts/scratch.hpp
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inst/include/dbarts/R_C_interface.hpp
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configure.ac
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tests
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| tests/testthat.R | |
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tests/testthat
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| tests/testthat/test-07-bartMultithreaded.R | |
| tests/testthat/test-05-binaryResponse.R | |
| tests/testthat/test-04-continuousResponse.R | |
| tests/testthat/test-10-makeModelMatrix.R | |
| tests/testthat/test-03-dbartsControl.R | |
| tests/testthat/test-08-xbart.R | |
| tests/testthat/test-11-multipleAssignment.R | |
| tests/testthat/test-06-dbartsSampler.R | |
| tests/testthat/test-02-dbartsModelArgs.R | |
| tests/testthat/test-01-dbartsDataArgs.R | |
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src
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src/rc
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src/rc/Makefile
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src/rc/util.c
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src/rc/bounds.c
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src/R_C_interface.cpp
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src/crossvalidate.hpp
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src/R_interface_common.cpp
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src/makeModelMatrixFromDataFrame.h
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src/R_interface_sampler.hpp
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src/R_interface_sampler.cpp
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src/guessNumCores.hpp
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src/config.hpp.in
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src/Makevars.in
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src/dbarts
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src/dbarts/binaryIO.hpp
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src/dbarts/Makefile
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src/dbarts/tree.cpp
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src/dbarts/functions.hpp
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src/dbarts/state.cpp
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src/dbarts/node.hpp
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src/dbarts/node.cpp
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src/dbarts/likelihood.cpp
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src/dbarts/bartFit.cpp
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src/dbarts/tree.hpp
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src/dbarts/birthDeathRule.hpp
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src/dbarts/config.hpp.in
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src/dbarts/changeRule.cpp
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src/dbarts/binaryIO.cpp
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src/dbarts/functions.cpp
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src/dbarts/swapRule.hpp
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src/dbarts/swapRule.cpp
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src/dbarts/parameterPrior.cpp
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src/dbarts/treePrior.cpp
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src/dbarts/changeRule.hpp
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src/dbarts/birthDeathRule.cpp
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src/dbarts/likelihood.hpp
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src/dbarts/config.hpp.win
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src/R_interface.cpp
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src/makeModelMatrixFromDataFrame.c
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src/R_interface_common.hpp
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src/external
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src/external/io.c
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src/external/string.c
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src/external/Makefile
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src/external/config.h.win
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src/external/config.h.in
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src/external/moments.c
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src/external/random.c
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src/external/randomNorm.c
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src/external/randomBase.c
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src/external/thread.c
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src/external/binaryIO.c
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src/external/linearAlgebra.c
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src/external/pthread.c
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src/external/adaptiveRadixTree.c
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src/guessNumCores.cpp
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src/Makevars.win
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src/crossvalidate.cpp
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src/config.hpp.win
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src/R_interface_crossvalidate.cpp
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src/R_interface_crossvalidate.hpp
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src/R_interface.hpp
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src/include
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src/include/rc
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src/include/rc/bounds.h
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src/include/rc/util.h
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src/include/external
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src/include/external/stats_mt.h
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src/include/external/stddef.h
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src/include/external/binaryIO.h
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src/include/external/string.h
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src/include/external/random.h
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src/include/external/alloca.h
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src/include/external/thread.h
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src/include/external/stats.h
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src/include/external/R.h
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src/include/external/Rinternals.h
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src/include/external/io.h
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src/include/external/linearAlgebra.h
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src/include/external/adaptiveRadixTree.h
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NAMESPACE
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R
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| R/multipleAssignment.R | |
| R/xbart.R | |
| R/model.R | |
| R/plot.R | |
| R/dbarts.R | |
| R/bart.R | |
| R/plotTree.R | |
| R/hooks.R | |
| R/data.R | |
| R/utility.R | |
| R/guessNumCores.R | |
| R/partialDependence.R | |
| R/A_class.R | |
| README.md | |
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MD5
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DESCRIPTION
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configure
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man
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| man/dbarts.Rd | |
| man/dbartsControl.Rd | |
| man/pdbart.Rd | |
| man/makeind.Rd | |
| man/xbart.Rd | |
| man/dbartsData.Rd | |
| man/guessNumCores.Rd | |
| man/bart.Rd | |
| man/dbartsSampler-class.Rd | |
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configure.win
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cleanup
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tools
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tools/m4
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tools/m4/ax_pthread.m4
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tools/m4/ax_snprintf_in_namespace_std.m4
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tools/m4/ax_check_compile_flag.m4
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tools/m4/ax_gcc_x86_avx_xgetbv.m4
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tools/m4/ax_gcc_x86_cpuid.m4
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tools/m4/ax_ext.m4
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tools/m4/ax_cxx_namespace_std.m4
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tools/m4/ax_func_posix_memalign.m4
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tools/build-aux
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tools/build-aux/install-sh
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tools/build-aux/config.guess
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tools/build-aux/config.sub
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.Rinstignore
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