dbarts: Discrete Bayesian Additive Regression Trees Sampler

Fits Bayesian additive regression trees (BART) while allowing the updating of predictors or response so that BART can be incorporated as a conditional model in a Gibbs/MH sampler. Also serves as a drop-in replacement for package 'BayesTree'.

AuthorVincent Dorie Developer [aut, cre], Hugh Chipman Developer [aut], Robert McCulloch Developer [aut]
Date of publication2016-11-02 19:53:57
MaintainerVincent Dorie Developer <vdorie@gmail.com>
LicenseGPL (>= 2)
Version0.8-7
https://github.com/vdorie/dbarts

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Files in this package

dbarts
dbarts/TODO
dbarts/inst
dbarts/inst/CITATION
dbarts/inst/NEWS.Rd
dbarts/inst/common
dbarts/inst/common/probitData.R
dbarts/inst/common/friedmanData.R
dbarts/inst/common/multithreadData.R
dbarts/inst/common/hillData.R
dbarts/inst/common/almostLinearBinaryData.R
dbarts/inst/include
dbarts/inst/include/dbarts
dbarts/inst/include/dbarts/control.hpp
dbarts/inst/include/dbarts/model.hpp
dbarts/inst/include/dbarts/data.hpp
dbarts/inst/include/dbarts/types.hpp
dbarts/inst/include/dbarts/cstdint.hpp
dbarts/inst/include/dbarts/bartFit.hpp
dbarts/inst/include/dbarts/state.hpp
dbarts/inst/include/dbarts/results.hpp
dbarts/inst/include/dbarts/scratch.hpp
dbarts/inst/include/dbarts/R_C_interface.hpp
dbarts/configure.ac
dbarts/tests
dbarts/tests/testthat.R
dbarts/tests/testthat
dbarts/tests/testthat/test-07-bartMultithreaded.R
dbarts/tests/testthat/test-05-binaryResponse.R
dbarts/tests/testthat/test-04-continuousResponse.R
dbarts/tests/testthat/test-10-makeModelMatrix.R
dbarts/tests/testthat/test-03-dbartsControl.R
dbarts/tests/testthat/test-08-xbart.R
dbarts/tests/testthat/test-11-multipleAssignment.R
dbarts/tests/testthat/test-06-dbartsSampler.R
dbarts/tests/testthat/test-02-dbartsModelArgs.R
dbarts/tests/testthat/test-01-dbartsDataArgs.R
dbarts/src
dbarts/src/rc
dbarts/src/rc/Makefile
dbarts/src/rc/util.c
dbarts/src/rc/bounds.c
dbarts/src/R_C_interface.cpp
dbarts/src/crossvalidate.hpp
dbarts/src/R_interface_common.cpp
dbarts/src/makeModelMatrixFromDataFrame.h
dbarts/src/R_interface_sampler.hpp
dbarts/src/R_interface_sampler.cpp
dbarts/src/guessNumCores.hpp
dbarts/src/config.hpp.in
dbarts/src/Makevars.in
dbarts/src/dbarts
dbarts/src/dbarts/binaryIO.hpp
dbarts/src/dbarts/Makefile
dbarts/src/dbarts/tree.cpp
dbarts/src/dbarts/functions.hpp
dbarts/src/dbarts/state.cpp
dbarts/src/dbarts/node.hpp
dbarts/src/dbarts/node.cpp
dbarts/src/dbarts/likelihood.cpp
dbarts/src/dbarts/bartFit.cpp
dbarts/src/dbarts/tree.hpp
dbarts/src/dbarts/birthDeathRule.hpp
dbarts/src/dbarts/config.hpp.in
dbarts/src/dbarts/changeRule.cpp
dbarts/src/dbarts/binaryIO.cpp
dbarts/src/dbarts/functions.cpp
dbarts/src/dbarts/swapRule.hpp
dbarts/src/dbarts/swapRule.cpp
dbarts/src/dbarts/parameterPrior.cpp
dbarts/src/dbarts/treePrior.cpp
dbarts/src/dbarts/changeRule.hpp
dbarts/src/dbarts/birthDeathRule.cpp
dbarts/src/dbarts/likelihood.hpp
dbarts/src/dbarts/config.hpp.win
dbarts/src/R_interface.cpp
dbarts/src/makeModelMatrixFromDataFrame.c
dbarts/src/R_interface_common.hpp
dbarts/src/external
dbarts/src/external/io.c
dbarts/src/external/string.c
dbarts/src/external/Makefile
dbarts/src/external/config.h.win
dbarts/src/external/config.h.in
dbarts/src/external/moments.c
dbarts/src/external/random.c
dbarts/src/external/randomNorm.c
dbarts/src/external/randomBase.c
dbarts/src/external/thread.c
dbarts/src/external/binaryIO.c
dbarts/src/external/linearAlgebra.c
dbarts/src/external/pthread.c
dbarts/src/external/adaptiveRadixTree.c
dbarts/src/guessNumCores.cpp
dbarts/src/Makevars.win
dbarts/src/crossvalidate.cpp
dbarts/src/config.hpp.win
dbarts/src/R_interface_crossvalidate.cpp
dbarts/src/R_interface_crossvalidate.hpp
dbarts/src/R_interface.hpp
dbarts/src/include
dbarts/src/include/rc
dbarts/src/include/rc/bounds.h
dbarts/src/include/rc/util.h
dbarts/src/include/external
dbarts/src/include/external/stats_mt.h
dbarts/src/include/external/stddef.h
dbarts/src/include/external/binaryIO.h
dbarts/src/include/external/string.h
dbarts/src/include/external/random.h
dbarts/src/include/external/alloca.h
dbarts/src/include/external/thread.h
dbarts/src/include/external/stats.h
dbarts/src/include/external/R.h
dbarts/src/include/external/Rinternals.h
dbarts/src/include/external/io.h
dbarts/src/include/external/linearAlgebra.h
dbarts/src/include/external/adaptiveRadixTree.h
dbarts/NAMESPACE
dbarts/R
dbarts/R/multipleAssignment.R dbarts/R/xbart.R dbarts/R/model.R dbarts/R/plot.R dbarts/R/dbarts.R dbarts/R/bart.R dbarts/R/plotTree.R dbarts/R/hooks.R dbarts/R/data.R dbarts/R/utility.R dbarts/R/guessNumCores.R dbarts/R/partialDependence.R dbarts/R/A_class.R
dbarts/README.md
dbarts/MD5
dbarts/DESCRIPTION
dbarts/configure
dbarts/man
dbarts/man/dbarts.Rd dbarts/man/dbartsControl.Rd dbarts/man/pdbart.Rd dbarts/man/makeind.Rd dbarts/man/xbart.Rd dbarts/man/dbartsData.Rd dbarts/man/guessNumCores.Rd dbarts/man/bart.Rd dbarts/man/dbartsSampler-class.Rd
dbarts/configure.win
dbarts/cleanup
dbarts/tools
dbarts/tools/m4
dbarts/tools/m4/ax_pthread.m4
dbarts/tools/m4/ax_snprintf_in_namespace_std.m4
dbarts/tools/m4/ax_check_compile_flag.m4
dbarts/tools/m4/ax_gcc_x86_avx_xgetbv.m4
dbarts/tools/m4/ax_gcc_x86_cpuid.m4
dbarts/tools/m4/ax_ext.m4
dbarts/tools/m4/ax_cxx_namespace_std.m4
dbarts/tools/m4/ax_func_posix_memalign.m4
dbarts/tools/build-aux
dbarts/tools/build-aux/install-sh
dbarts/tools/build-aux/config.guess
dbarts/tools/build-aux/config.sub
dbarts/.Rinstignore

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