InterPro: InterPro domains (InterPro).

In dcGOR: Analysis of Ontologies and Protein Domain Annotations

Description

An object of class "InfoDataFrame" that contains information on InterPro domains (InterPro). This data is prepared based on ftp://[e-mail]/pub/databases/interpro/Current/entry.list.

Usage

data(InterPro)

Value

an object of class InfoDataFrame. It has slots for data and dimLabels:

• data: a data.frame containing information about 11638 annotatable domains (in rows), with 3 columns ("id" for InterPro ID, and "level" always equals "InterPro", "description" for InterPro description)

• dimLabels: a character describing labels for rows and columns in data

References

Hunter et al. (2012) InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res, 40(Database issue):D306-12.

See Also

InfoDataFrame-class

Examples

# load data
data(InterPro)
InterPro
# retrieve the dimension
dim(InterPro)
# retrieve names of columns
colNames(InterPro)
# retrieve the first 5 rows of data
Data(InterPro)[1:5,]

dcGOR documentation built on May 2, 2019, 3:34 p.m.