Methods defined for S4 class Coutput

Description

Methods defined for S4 class Coutput.

Usage

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## S4 method for signature 'Coutput'
show(object)

## S4 method for signature 'Coutput'
ratio(x)

## S4 method for signature 'Coutput'
zscore(x)

## S4 method for signature 'Coutput'
pvalue(x)

## S4 method for signature 'Coutput'
adjp(x)

## S4 method for signature 'Coutput'
cnetwork(x)

## S4 method for signature 'Coutput'
write(x, file = "Coutput.txt", saveBy = c("adjp",
"pvalue", "zscore", "ratio"), verbose = T)

Arguments

object

an object of S4 class Coutput. Usually this is an output from dcRWRpipeline

x

an object of S4 class Coutput. Usually this is part of the output from dcRWRpipeline

file

a character specifying a file name written into. By default, it is 'Coutput.txt'

saveBy

which statistics will be saved. It can be "pvalue" for p value, "adjp" for adjusted p value, "zscore" for z-score, "ratio" for ratio

verbose

logical to indicate whether the messages will be displayed in the screen. By default, it sets to true for display

Value

write(x) also returns a symmetrix matrix storing the specific statistics

See Also

Coutput-class

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