dcemriS4: A Package for Image Analysis of DCE-MRI (S4 Implementation)

A collection of routines and documentation that allows one to perform voxel-wise quantitative analysis of dynamic contrast-enhanced MRI (DEC-MRI) and diffusion-weighted imaging (DWI) data, with emphasis on oncology applications.

Install the latest version of this package by entering the following in R:
install.packages("dcemriS4")
AuthorBrandon Whitcher [aut, cre], Volker Schmid [aut], Andrew Thornton [ctb]
Date of publication2015-04-29 08:13:22
MaintainerBrandon Whitcher <bwhitcher@gmail.com>
LicenseBSD_3_clause + file LICENSE
Version0.55
http://www.dcemri.com/
http://dcemri.blogspot.com/

View on CRAN

Functions

ADC.fast Man page
ADC.fast,array-method Man page
adc.lm Man page
aif-models Man page
aif.orton.exp Man page
aifParameters Man page
breast Man page
buckley Man page
CA.fast Man page
CA.fast2 Man page
CA.fast2,array-method Man page
CA.fast,array-method Man page
compartmentalModel Man page
convFFT Man page
dcemri.bayes Man page
dcemri.bayes,array-method Man page
dcemri.bayes.single Man page
dcemri.lm Man page
dcemri.lm,array-method Man page
dcemri.map Man page
dcemri.map,array-method Man page
dcemriS4 Man page
dcemriS4-package Man page
dcemri.spline Man page
dcemri.spline,array-method Man page
dcemri.spline.single Man page
doubleAngleMethod Man page
E10.lm Man page
expConv Man page
extractAIF Man page
fastTemplateMatching Man page
fastTemplateMatching,array-method Man page
findCenter Man page
kineticModel Man page
meningioma Man page
model.orton.exp Man page
orton.exp.lm Man page
R10.lm Man page
R1.fast Man page
R1.fast,array-method Man page
R1.lm Man page
rCBV Man page
rCBV.fast Man page
rCBV.fast,anlz-method Man page
rCBV.fast,array-method Man page
rCBV.fast,nifti-method Man page
shift3D Man page
T2.fast Man page
T2.fast,anlz-method Man page
T2.fast,array-method Man page
T2.fast,nifti-method Man page
T2.lm Man page

Files

inst
inst/CITATION
inst/nifti
inst/nifti/fl3d_vibe-15deg.nii.gz
inst/nifti/SDAM_smooth.nii.gz
inst/nifti/fl3d_vibe-20deg.nii.gz
inst/nifti/t1_phantom_mask.nii.gz
inst/nifti/SDAM_ep2d_120deg_26slc.nii.gz
inst/nifti/fl3d_vibe-5deg.nii.gz
inst/nifti/fl3d_vibe-25deg.nii.gz
inst/nifti/fl3d_vibe-10deg.nii.gz
inst/nifti/SDAM_ep2d_60deg_26slc.nii.gz
inst/doc
inst/doc/dcemriS4.R
inst/doc/dcemriS4.pdf
inst/doc/dcemriS4.Rnw
tests
tests/Examples
tests/Examples/dcemriS4-Ex.Rout.save
tests/testthat.R
tests/testthat
tests/testthat/test_models.R
src
src/Makevars
src/zufall.h
src/dcesp.c
src/baymri.c
src/zufall.c
NAMESPACE
data
data/buckley.rda
data/buckley.txt.xz
R
R/dcemri_spline.R R/rcbv.R R/dcemri_map.R R/model.R R/dwi.R R/dcemri_bayes.R R/wrappers.R R/kineticmodel.R R/dcemriS4-package.R R/aif.R R/template_matching.R R/flipangle.R R/dcemri_lm.R R/forms.R R/zzz.R R/cpmg.R
vignettes
vignettes/281949_19040721_perfusion_ktrans_map.png
vignettes/281949_19040721_perfusion_ktrans_bayes.png
vignettes/281949_19040721_perfusion_Fp_spline.png
vignettes/281949_19040721_axtensor_D.png
vignettes/281949_19040721_perfusion_kep.png
vignettes/281949_19040721_perfusion_ve.png
vignettes/281949_19040721_perfusion_sse.png
vignettes/281949_19040721_perfusion_ktrans_spline.png
vignettes/281949_19040721_perfusion_ktrans.png
vignettes/dcemriS4.bib
vignettes/281949_19040721_perfusion_vp.png
vignettes/281949_19040721_perfusion_ktrans7.png
vignettes/281949_19040721_perfusion_ktrans_bayes_cv.png
vignettes/281949_19040721_perfusion_ktrans_bayes_sd.png
vignettes/dcemriS4.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/buckley.Rd man/rcbv-methods.Rd man/convFFT.Rd man/aif-models.Rd man/dcemriS4-package.Rd man/relaxation-methods.Rd man/compartmentalModel.Rd man/kineticModel.Rd man/dcemri.lm-methods.Rd man/dcemri.spline-methods.Rd man/findCenter.Rd man/CPMG-methods.Rd man/aifParameters.Rd man/dcemri.bayes-methods.Rd man/dcemri.map-methods.Rd man/ADC-methods.Rd man/fastTemplateMatching.Rd man/expConv.Rd man/extractAIF.Rd man/doubleAngleMethod.Rd man/shift3D.Rd
LICENSE

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.