dcemriS4: A Package for Image Analysis of DCE-MRI (S4 Implementation)

A collection of routines and documentation that allows one to perform voxel-wise quantitative analysis of dynamic contrast-enhanced MRI (DEC-MRI) and diffusion-weighted imaging (DWI) data, with emphasis on oncology applications.

Author
Brandon Whitcher [aut, cre], Volker Schmid [aut], Andrew Thornton [ctb]
Date of publication
2015-04-29 08:13:22
Maintainer
Brandon Whitcher <bwhitcher@gmail.com>
License
BSD_3_clause + file LICENSE
Version
0.55
URLs

View on CRAN

Man pages

ADC-methods
Estimate the Apparent Diffusion Coefficient (ADC)
aif-models
Arterial Input Functions
aifParameters
Parameters for Arterial Input Functions
buckley
Simulated Data from Buckley (2002)
compartmentalModel
Compartmental Models for Kinetic Parameter Estimation
convFFT
Convolution of 3D Arrays using the Fourier Transform
CPMG-methods
Quantitative T2 Methods
dcemri.bayes-methods
Bayesian Methods for Pharmacokinetic Modeling of Dynamic...
dcemri.lm-methods
Pharmacokinetic Models for Dynamic Contrast-Enhanced MRI Data
dcemri.map-methods
Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI...
dcemriS4-package
dcemri: A Package for Medical Image Analysis (S4...
dcemri.spline-methods
Bayesian P-Splines for Dynamic Contrast-Enhanced MRI Data
doubleAngleMethod
Double-Angle Method for B1+ Mapping
expConv
Convolution of Exponential Functions
extractAIF
Seed Growing for a 4D Array
fastTemplateMatching
Fast Template Matching via Cross-Correlation
findCenter
Find the Center of a Binary Mask
kineticModel
Pharmacokinetic Models
rcbv-methods
Regional Cerebral Blood Volume
relaxation-methods
Estimate Intrinsic Tissue Relaxivity
shift3D
Shift a 3D Array in One Dimension

Files in this package

dcemriS4
dcemriS4/inst
dcemriS4/inst/CITATION
dcemriS4/inst/nifti
dcemriS4/inst/nifti/fl3d_vibe-15deg.nii.gz
dcemriS4/inst/nifti/SDAM_smooth.nii.gz
dcemriS4/inst/nifti/fl3d_vibe-20deg.nii.gz
dcemriS4/inst/nifti/t1_phantom_mask.nii.gz
dcemriS4/inst/nifti/SDAM_ep2d_120deg_26slc.nii.gz
dcemriS4/inst/nifti/fl3d_vibe-5deg.nii.gz
dcemriS4/inst/nifti/fl3d_vibe-25deg.nii.gz
dcemriS4/inst/nifti/fl3d_vibe-10deg.nii.gz
dcemriS4/inst/nifti/SDAM_ep2d_60deg_26slc.nii.gz
dcemriS4/inst/doc
dcemriS4/inst/doc/dcemriS4.R
dcemriS4/inst/doc/dcemriS4.pdf
dcemriS4/inst/doc/dcemriS4.Rnw
dcemriS4/tests
dcemriS4/tests/Examples
dcemriS4/tests/Examples/dcemriS4-Ex.Rout.save
dcemriS4/tests/testthat.R
dcemriS4/tests/testthat
dcemriS4/tests/testthat/test_models.R
dcemriS4/src
dcemriS4/src/Makevars
dcemriS4/src/zufall.h
dcemriS4/src/dcesp.c
dcemriS4/src/baymri.c
dcemriS4/src/zufall.c
dcemriS4/NAMESPACE
dcemriS4/data
dcemriS4/data/buckley.rda
dcemriS4/data/buckley.txt.xz
dcemriS4/R
dcemriS4/R/dcemri_spline.R
dcemriS4/R/rcbv.R
dcemriS4/R/dcemri_map.R
dcemriS4/R/model.R
dcemriS4/R/dwi.R
dcemriS4/R/dcemri_bayes.R
dcemriS4/R/wrappers.R
dcemriS4/R/kineticmodel.R
dcemriS4/R/dcemriS4-package.R
dcemriS4/R/aif.R
dcemriS4/R/template_matching.R
dcemriS4/R/flipangle.R
dcemriS4/R/dcemri_lm.R
dcemriS4/R/forms.R
dcemriS4/R/zzz.R
dcemriS4/R/cpmg.R
dcemriS4/vignettes
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_map.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_bayes.png
dcemriS4/vignettes/281949_19040721_perfusion_Fp_spline.png
dcemriS4/vignettes/281949_19040721_axtensor_D.png
dcemriS4/vignettes/281949_19040721_perfusion_kep.png
dcemriS4/vignettes/281949_19040721_perfusion_ve.png
dcemriS4/vignettes/281949_19040721_perfusion_sse.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_spline.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans.png
dcemriS4/vignettes/dcemriS4.bib
dcemriS4/vignettes/281949_19040721_perfusion_vp.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans7.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_bayes_cv.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_bayes_sd.png
dcemriS4/vignettes/dcemriS4.Rnw
dcemriS4/MD5
dcemriS4/build
dcemriS4/build/vignette.rds
dcemriS4/DESCRIPTION
dcemriS4/man
dcemriS4/man/buckley.Rd
dcemriS4/man/rcbv-methods.Rd
dcemriS4/man/convFFT.Rd
dcemriS4/man/aif-models.Rd
dcemriS4/man/dcemriS4-package.Rd
dcemriS4/man/relaxation-methods.Rd
dcemriS4/man/compartmentalModel.Rd
dcemriS4/man/kineticModel.Rd
dcemriS4/man/dcemri.lm-methods.Rd
dcemriS4/man/dcemri.spline-methods.Rd
dcemriS4/man/findCenter.Rd
dcemriS4/man/CPMG-methods.Rd
dcemriS4/man/aifParameters.Rd
dcemriS4/man/dcemri.bayes-methods.Rd
dcemriS4/man/dcemri.map-methods.Rd
dcemriS4/man/ADC-methods.Rd
dcemriS4/man/fastTemplateMatching.Rd
dcemriS4/man/expConv.Rd
dcemriS4/man/extractAIF.Rd
dcemriS4/man/doubleAngleMethod.Rd
dcemriS4/man/shift3D.Rd
dcemriS4/LICENSE