dcemriS4: A Package for Image Analysis of DCE-MRI (S4 Implementation)

A collection of routines and documentation that allows one to perform voxel-wise quantitative analysis of dynamic contrast-enhanced MRI (DEC-MRI) and diffusion-weighted imaging (DWI) data, with emphasis on oncology applications.

AuthorBrandon Whitcher [aut, cre], Volker Schmid [aut], Andrew Thornton [ctb]
Date of publication2015-04-29 08:13:22
MaintainerBrandon Whitcher <bwhitcher@gmail.com>
LicenseBSD_3_clause + file LICENSE
Version0.55
http://www.dcemri.com/
http://dcemri.blogspot.com/

View on CRAN

Functions

ADC.fast Man page
ADC.fast,array-method Man page
adc.lm Man page
aif-models Man page
aif.orton.exp Man page
aifParameters Man page
breast Man page
buckley Man page
CA.fast Man page
CA.fast2 Man page
CA.fast2,array-method Man page
CA.fast,array-method Man page
compartmentalModel Man page
convFFT Man page
dcemri.bayes Man page
dcemri.bayes,array-method Man page
dcemri.bayes.single Man page
dcemri.lm Man page
dcemri.lm,array-method Man page
dcemri.map Man page
dcemri.map,array-method Man page
dcemriS4 Man page
dcemriS4-package Man page
dcemri.spline Man page
dcemri.spline,array-method Man page
dcemri.spline.single Man page
doubleAngleMethod Man page
E10.lm Man page
expConv Man page
extractAIF Man page
fastTemplateMatching Man page
fastTemplateMatching,array-method Man page
findCenter Man page
kineticModel Man page
meningioma Man page
model.orton.exp Man page
orton.exp.lm Man page
R10.lm Man page
R1.fast Man page
R1.fast,array-method Man page
R1.lm Man page
rCBV Man page
rCBV.fast Man page
rCBV.fast,anlz-method Man page
rCBV.fast,array-method Man page
rCBV.fast,nifti-method Man page
shift3D Man page
T2.fast Man page
T2.fast,anlz-method Man page
T2.fast,array-method Man page
T2.fast,nifti-method Man page
T2.lm Man page

Files

dcemriS4
dcemriS4/inst
dcemriS4/inst/CITATION
dcemriS4/inst/nifti
dcemriS4/inst/nifti/fl3d_vibe-15deg.nii.gz
dcemriS4/inst/nifti/SDAM_smooth.nii.gz
dcemriS4/inst/nifti/fl3d_vibe-20deg.nii.gz
dcemriS4/inst/nifti/t1_phantom_mask.nii.gz
dcemriS4/inst/nifti/SDAM_ep2d_120deg_26slc.nii.gz
dcemriS4/inst/nifti/fl3d_vibe-5deg.nii.gz
dcemriS4/inst/nifti/fl3d_vibe-25deg.nii.gz
dcemriS4/inst/nifti/fl3d_vibe-10deg.nii.gz
dcemriS4/inst/nifti/SDAM_ep2d_60deg_26slc.nii.gz
dcemriS4/inst/doc
dcemriS4/inst/doc/dcemriS4.R
dcemriS4/inst/doc/dcemriS4.pdf
dcemriS4/inst/doc/dcemriS4.Rnw
dcemriS4/tests
dcemriS4/tests/Examples
dcemriS4/tests/Examples/dcemriS4-Ex.Rout.save
dcemriS4/tests/testthat.R
dcemriS4/tests/testthat
dcemriS4/tests/testthat/test_models.R
dcemriS4/src
dcemriS4/src/Makevars
dcemriS4/src/zufall.h
dcemriS4/src/dcesp.c
dcemriS4/src/baymri.c
dcemriS4/src/zufall.c
dcemriS4/NAMESPACE
dcemriS4/data
dcemriS4/data/buckley.rda
dcemriS4/data/buckley.txt.xz
dcemriS4/R
dcemriS4/R/dcemri_spline.R dcemriS4/R/rcbv.R dcemriS4/R/dcemri_map.R dcemriS4/R/model.R dcemriS4/R/dwi.R dcemriS4/R/dcemri_bayes.R dcemriS4/R/wrappers.R dcemriS4/R/kineticmodel.R dcemriS4/R/dcemriS4-package.R dcemriS4/R/aif.R dcemriS4/R/template_matching.R dcemriS4/R/flipangle.R dcemriS4/R/dcemri_lm.R dcemriS4/R/forms.R dcemriS4/R/zzz.R dcemriS4/R/cpmg.R
dcemriS4/vignettes
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_map.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_bayes.png
dcemriS4/vignettes/281949_19040721_perfusion_Fp_spline.png
dcemriS4/vignettes/281949_19040721_axtensor_D.png
dcemriS4/vignettes/281949_19040721_perfusion_kep.png
dcemriS4/vignettes/281949_19040721_perfusion_ve.png
dcemriS4/vignettes/281949_19040721_perfusion_sse.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_spline.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans.png
dcemriS4/vignettes/dcemriS4.bib
dcemriS4/vignettes/281949_19040721_perfusion_vp.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans7.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_bayes_cv.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_bayes_sd.png
dcemriS4/vignettes/dcemriS4.Rnw
dcemriS4/MD5
dcemriS4/build
dcemriS4/build/vignette.rds
dcemriS4/DESCRIPTION
dcemriS4/man
dcemriS4/man/buckley.Rd dcemriS4/man/rcbv-methods.Rd dcemriS4/man/convFFT.Rd dcemriS4/man/aif-models.Rd dcemriS4/man/dcemriS4-package.Rd dcemriS4/man/relaxation-methods.Rd dcemriS4/man/compartmentalModel.Rd dcemriS4/man/kineticModel.Rd dcemriS4/man/dcemri.lm-methods.Rd dcemriS4/man/dcemri.spline-methods.Rd dcemriS4/man/findCenter.Rd dcemriS4/man/CPMG-methods.Rd dcemriS4/man/aifParameters.Rd dcemriS4/man/dcemri.bayes-methods.Rd dcemriS4/man/dcemri.map-methods.Rd dcemriS4/man/ADC-methods.Rd dcemriS4/man/fastTemplateMatching.Rd dcemriS4/man/expConv.Rd dcemriS4/man/extractAIF.Rd dcemriS4/man/doubleAngleMethod.Rd dcemriS4/man/shift3D.Rd
dcemriS4/LICENSE

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.