query_GTEx: GTEx raw query data

In deTS: Tissue-Specific Enrichment Analysis

Description

An example of RNA-Seq query data from GTEx data for tissue-specific enrichment analysis

Usage

data("query_GTEx")

Format

A data frame with average expression level of 18067 gene in 47 GTEx tissues.

Row is genes symbol and column is sample names.

Adipose - Subcutaneous Adipose - Visceral (Omentum) Adrenal Gland Artery - Aorta Artery - Coronary

OR4F5 0.0317 0.0284 0.0469 0.0133 0.0225

SAMD11 0.4451 2.3056 3.8928 3.5822 2.5632

NOC2L 21.9084 21.0439 19.4613 19.4929 19.8367

KLHL17 4.1406 4.4075 4.4227 5.0840 5.3749

PLEKHN1 0.4531 0.3452 1.1795 0.3081 0.3722

Details

nothing

Source

nothing

References

Pei G., Dai Y., Zhao Z., Jia P. (2019) deTS: Tissue-Specific Enrichment Analysis to decode tissue specificity. Bioinformatics, In submission.

Examples

data(query_GTEx)

deTS documentation built on May 2, 2019, 4:51 a.m.