tsea.summary: Tissue-specific enrichment analysis result summary

In deTS: Tissue-Specific Enrichment Analysis

Description

Tissue-specific enrichment analysis result summary (list the top 3 most enriched tissues) from the given gene list or RNA-seq expression profiles.

Usage

tsea.summary(tsea_result)

Arguments

tsea_result

the result of tissue-specific enrichment analysis, which produced by "tsea.analysis", "tsea.analysis.multiple" or "tsea.expression.decode".

Details

Tissue-specific enrichment analysis result summary

Value

A data frame with summary result of top 3 most enriched tissues.

Rows stand for sample names and columns stand for top 3 most enriched tissues (with p-value).

Note

nothing

Author(s)

Guangsheng Pei

References

Pei G., Dai Y., Zhao Z., Jia P. (2019) deTS: Tissue-Specific Enrichment Analysis to decode tissue specificity. Bioinformatics, In submission.

See Also

https://github.com/bsml320/deTS

Examples

data(query_GTEx)
query_matrix = query_GTEx
data(correction_factor)
data(ENCODE_z_score)
query_mat_zscore_nor = tsea.expression.normalization(query_matrix, 
	correction_factor, normalization = "z-score")
tseaed_in_ENCODE = tsea.expression.decode(query_mat_zscore_nor, 
	ENCODE_z_score, 0.05, p.adjust.method = "BH")	
tseaed_in_ENCODE_summary = tsea.summary(tseaed_in_ENCODE)

Example output

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deTS documentation built on May 2, 2019, 4:51 a.m.