Description Usage Arguments Value See Also
The pan-tissue reference matrix is based on a fixed-effects meta-analysis of eight circadian transcriptome datasets from mice, as described in Shilts et al. 2018(doi: 10.7717/peerj.4327). The human blood reference matrix is based an analysis of three microarray datasets (manuscript in preparation).
1 2 3 4 5 |
species |
Currently either 'human' or 'mouse'. Only affects the row and column names of the correlation matrix, not the actual values. |
tissue |
One of either 'pan' or 'blood'. |
useEntrezGeneId |
If |
A matrix of Spearman correlation values.
GSE19188, plotRefHeatmap()
, calcCCD()
, calcDeltaCCD()
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