| .onAttach |
Source code
|
| DEMICel |
Man page
|
| DEMICel-class |
Man page
|
| DEMIClust |
Man page
|
| DEMIClust-class |
Man page
|
| DEMIDiff |
Man page
|
| DEMIDiff-class |
Man page
|
| DEMIExperiment |
Man page
|
| DEMIExperiment-class |
Man page
|
| DEMIGroup |
Man page
|
| DEMIGroup-class |
Man page
|
| DEMIMessages |
Man page
|
| DEMIPathway |
Man page
|
| DEMIResult-class |
Man page
|
| addCustomTargets |
Man page
|
| addCytoband |
Man page
|
| adjust4maxprobes |
Man page
Source code
|
| attachResult |
Man page
|
| attachResult,DEMIExperiment,DEMIDiff-method |
Man page
|
| calcHypergeoExon |
Man page
Source code
|
| calcHypergeoProb |
Man page
Source code
|
| celMatrixNormalize |
Man page
|
| celMatrixNormalize,DEMIExperiment,function-method |
Man page
|
| check4probe |
Man page
|
| check4probe,DEMIExperiment,vector-method |
Man page
|
| check4target |
Man page
|
| check4target,DEMIExperiment,vector-method |
Man page
|
| checkDEMIExperiment_analysis |
Man page
Source code
|
| checkDEMIExperiment_celpath |
Man page
Source code
|
| checkDEMIExperiment_experiment |
Man page
Source code
|
| checkDEMIExperiment_maxprobes |
Man page
Source code
|
| checkDEMIExperiment_maxtargets |
Man page
Source code
|
| checkDEMIExperiment_normalization |
Man page
Source code
|
| checkDEMIExperiment_pmsize |
Man page
Source code
|
| cleanorganismname |
Man page
Source code
|
| cluster |
Man page
|
| cluster,DEMIClust-method |
Man page
|
| createGroup |
Man page
|
| createGroup,DEMIClust-method |
Man page
|
| customObject |
Man page
|
| customObject,DEMIClust-method |
Man page
|
| demi |
Man page
|
| demi.comp.test |
Man page
|
| demi.t.test |
Man page
|
| demi.wilcox.test |
Man page
|
| demi.wilcox.test.fast |
Man page
|
| demiequal |
Man page
|
| demisummary |
Man page
|
| demisummary,DEMIDiff-method |
Man page
|
| demisummary,DEMIExperiment-method |
Man page
|
| diffSpliceScore |
Man page
Source code
|
| diffexp |
Man page
|
| diffexp,DEMIDiff-method |
Man page
|
| findCytoband |
Man page
|
| getAlignment |
Man page
|
| getAlignment,DEMIExperiment-method |
Man page
|
| getAnalysis |
Man page
|
| getAnalysis,DEMIExperiment-method |
Man page
|
| getAnnotation |
Man page
|
| getAnnotation,DEMIExperiment-method |
Man page
|
| getArraytype |
Man page
|
| getArraytype,DEMIExperiment-method |
Man page
|
| getCelMatrix |
Man page
|
| getCelMatrix,DEMIExperiment-method |
Man page
|
| getCelpath |
Man page
|
| getCelpath,DEMIExperiment-method |
Man page
|
| getClustMethod |
Man page
|
| getClustMethod,DEMIClust-method |
Man page
|
| getCluster |
Man page
|
| getCluster,DEMIClust-method |
Man page
|
| getCutoffPvalue |
Man page
|
| getCutoffPvalue,DEMIClust-method |
Man page
|
| getCytoband |
Man page
|
| getCytoband,DEMIExperiment-method |
Man page
|
| getDEMIClust |
Man page
|
| getDEMIClust,DEMIDiff-method |
Man page
|
| getExperiment |
Man page
|
| getExperiment,DEMIClust-method |
Man page
|
| getExperiment,DEMIDiff-method |
Man page
|
| getExperiment,DEMIExperiment-method |
Man page
|
| getGroup |
Man page
|
| getGroup,DEMIClust-method |
Man page
|
| getGroup,DEMIDiff-method |
Man page
|
| getGroup,DEMIResult-method |
Man page
|
| getGroupA |
Man page
|
| getGroupA,DEMIGroup-method |
Man page
|
| getGroupB |
Man page
|
| getGroupB,DEMIGroup-method |
Man page
|
| getGroupNames |
Man page
|
| getGroupNames,DEMIGroup-method |
Man page
|
| getIndexA |
Man page
|
| getIndexA,DEMIGroup-method |
Man page
|
| getIndexB |
Man page
|
| getIndexB,DEMIGroup-method |
Man page
|
| getMaxprobes |
Man page
|
| getMaxprobes,DEMIExperiment-method |
Man page
|
| getMaxtargets |
Man page
|
| getMaxtargets,DEMIExperiment-method |
Man page
|
| getName |
Man page
|
| getName,DEMIDiff-method |
Man page
|
| getNormMatrix |
Man page
|
| getNormMatrix,DEMIExperiment-method |
Man page
|
| getOrganism |
Man page
|
| getOrganism,DEMIExperiment-method |
Man page
|
| getPathway |
Man page
|
| getPathway,DEMIExperiment-method |
Man page
|
| getProbeLevel |
Man page
|
| getProbeLevel,DEMIDiff,vector,logical-method |
Man page
|
| getProbeLevel,DEMIExperiment,vector,logical-method |
Man page
|
| getResult |
Man page
|
| getResult,DEMIDiff-method |
Man page
|
| getResult,DEMIExperiment-method |
Man page
|
| getResult,DEMIResult-method |
Man page
|
| getResultTable |
Man page
|
| getResultTable,DEMIDiff-method |
Man page
|
| getResultTable,DEMIExperiment-method |
Man page
|
| getTargetAnnotation |
Man page
|
| getTargetAnnotation,DEMIExperiment,vector-method |
Man page
|
| getTargetProbes |
Man page
|
| getTargetProbes,DEMIDiff,vector-method |
Man page
|
| getTargetProbes,DEMIExperiment,vector-method |
Man page
|
| initialize.DEMICel |
Man page
|
| initialize.DEMIClust |
Man page
|
| initialize.DEMIDiff |
Man page
|
| initialize.DEMIExperiment |
Man page
|
| initialize.DEMIGroup |
Man page
|
| initialize.DEMIResult |
Man page
|
| loadAnnotation |
Man page
|
| loadAnnotation,DEMIExperiment,environment-method |
Man page
|
| loadBlat |
Man page
|
| loadBlat,DEMIExperiment,environment-method |
Man page
|
| loadCel |
Man page
|
| loadCel,DEMIExperiment-method |
Man page
|
| loadCytoband |
Man page
|
| loadCytoband,DEMIExperiment,environment-method |
Man page
|
| loadDEMILibrary |
Man page
|
| loadDEMILibrary,DEMIExperiment-method |
Man page
|
| loadPathway |
Man page
|
| loadPathway,DEMIExperiment,environment-method |
Man page
|
| makeDEMIResultsTable |
Man page
|
| makeUCSCLink |
Man page
|
| matchExonGene |
Man page
Source code
|
| norm.quantile |
Man page
|
| norm.quantile,matrix-method |
Man page
|
| norm.rrank |
Man page
|
| norm.rrank,matrix-method |
Man page
|
| norm.rrank,numeric-method |
Man page
|
| probe.levels |
Man page
|
| probe.levels,DEMIExperiment,character-method |
Man page
|
| probe.plot |
Man page
|
| probe.plot,DEMIExperiment,character-method |
Man page
|
| totalMatches_all |
Man page
Source code
|
| totalMatches_cluster |
Man page
Source code
|
| validDEMIClust |
Man page
|
| validDEMIExperiment |
Man page
|
| wprob |
Man page
|
