API for demi
Differential Expression from Multiple Indicators

Global functions
DEMICel Man page
DEMICel-class Man page
DEMIClust Man page
DEMIClust-class Man page
DEMIDiff Man page
DEMIDiff-class Man page
DEMIExperiment Man page
DEMIExperiment-class Man page
DEMIGroup Man page
DEMIGroup-class Man page
DEMIMessages Man page
DEMIPathway Man page
DEMIResult-class Man page
addCustomTargets Man page
addCytoband Man page
adjust4maxprobes Man page Source code
attachResult Man page
attachResult,DEMIExperiment,DEMIDiff-method Man page
calcHypergeoExon Man page Source code
calcHypergeoProb Man page Source code
celMatrixNormalize Man page
celMatrixNormalize,DEMIExperiment,function-method Man page
check4probe Man page
check4probe,DEMIExperiment,vector-method Man page
check4target Man page
check4target,DEMIExperiment,vector-method Man page
checkDEMIExperiment_analysis Man page Source code
checkDEMIExperiment_celpath Man page Source code
checkDEMIExperiment_experiment Man page Source code
checkDEMIExperiment_maxprobes Man page Source code
checkDEMIExperiment_maxtargets Man page Source code
checkDEMIExperiment_normalization Man page Source code
checkDEMIExperiment_pmsize Man page Source code
cleanorganismname Man page Source code
cluster Man page
cluster,DEMIClust-method Man page
createGroup Man page
createGroup,DEMIClust-method Man page
customObject Man page
customObject,DEMIClust-method Man page
demi Man page
demi.comp.test Man page
demi.t.test Man page
demi.wilcox.test Man page
demi.wilcox.test.fast Man page
demiequal Man page
demisummary Man page
demisummary,DEMIDiff-method Man page
demisummary,DEMIExperiment-method Man page
diffSpliceScore Man page Source code
diffexp Man page
diffexp,DEMIDiff-method Man page
findCytoband Man page
getAlignment Man page
getAlignment,DEMIExperiment-method Man page
getAnalysis Man page
getAnalysis,DEMIExperiment-method Man page
getAnnotation Man page
getAnnotation,DEMIExperiment-method Man page
getArraytype Man page
getArraytype,DEMIExperiment-method Man page
getCelMatrix Man page
getCelMatrix,DEMIExperiment-method Man page
getCelpath Man page
getCelpath,DEMIExperiment-method Man page
getClustMethod Man page
getClustMethod,DEMIClust-method Man page
getCluster Man page
getCluster,DEMIClust-method Man page
getCutoffPvalue Man page
getCutoffPvalue,DEMIClust-method Man page
getCytoband Man page
getCytoband,DEMIExperiment-method Man page
getDEMIClust Man page
getDEMIClust,DEMIDiff-method Man page
getExperiment Man page
getExperiment,DEMIClust-method Man page
getExperiment,DEMIDiff-method Man page
getExperiment,DEMIExperiment-method Man page
getGroup Man page
getGroup,DEMIClust-method Man page
getGroup,DEMIDiff-method Man page
getGroup,DEMIResult-method Man page
getGroupA Man page
getGroupA,DEMIGroup-method Man page
getGroupB Man page
getGroupB,DEMIGroup-method Man page
getGroupNames Man page
getGroupNames,DEMIGroup-method Man page
getIndexA Man page
getIndexA,DEMIGroup-method Man page
getIndexB Man page
getIndexB,DEMIGroup-method Man page
getMaxprobes Man page
getMaxprobes,DEMIExperiment-method Man page
getMaxtargets Man page
getMaxtargets,DEMIExperiment-method Man page
getName Man page
getName,DEMIDiff-method Man page
getNormMatrix Man page
getNormMatrix,DEMIExperiment-method Man page
getOrganism Man page
getOrganism,DEMIExperiment-method Man page
getPathway Man page
getPathway,DEMIExperiment-method Man page
getProbeLevel Man page
getProbeLevel,DEMIDiff,vector,logical-method Man page
getProbeLevel,DEMIExperiment,vector,logical-method Man page
getResult Man page
getResult,DEMIDiff-method Man page
getResult,DEMIExperiment-method Man page
getResult,DEMIResult-method Man page
getResultTable Man page
getResultTable,DEMIDiff-method Man page
getResultTable,DEMIExperiment-method Man page
getTargetAnnotation Man page
getTargetAnnotation,DEMIExperiment,vector-method Man page
getTargetProbes Man page
getTargetProbes,DEMIDiff,vector-method Man page
getTargetProbes,DEMIExperiment,vector-method Man page
initialize.DEMICel Man page
initialize.DEMIClust Man page
initialize.DEMIDiff Man page
initialize.DEMIExperiment Man page
initialize.DEMIGroup Man page
initialize.DEMIResult Man page
loadAnnotation Man page
loadAnnotation,DEMIExperiment,environment-method Man page
loadBlat Man page
loadBlat,DEMIExperiment,environment-method Man page
loadCel Man page
loadCel,DEMIExperiment-method Man page
loadCytoband Man page
loadCytoband,DEMIExperiment,environment-method Man page
loadDEMILibrary Man page
loadDEMILibrary,DEMIExperiment-method Man page
loadPathway Man page
loadPathway,DEMIExperiment,environment-method Man page
makeDEMIResultsTable Man page
makeUCSCLink Man page
matchExonGene Man page Source code
norm.quantile Man page
norm.quantile,matrix-method Man page
norm.rrank Man page
norm.rrank,matrix-method Man page
norm.rrank,numeric-method Man page
onAttach Source code
probe.levels Man page
probe.levels,DEMIExperiment,character-method Man page
probe.plot Man page
probe.plot,DEMIExperiment,character-method Man page
totalMatches_all Man page Source code
totalMatches_cluster Man page Source code
validDEMIClust Man page
validDEMIExperiment Man page
wprob Man page
demi documentation built on May 30, 2017, 2:40 a.m.