tunedStepSize: Get values of the tuned step sizes.

In denoiSeq: Differential Expression Analysis Using a Bottom-Up Model

Description

Extracts the tuned step sizes for sampling each parameter from the return value of denoiseq.

Usage

tunedStepSize(RDobject)

Arguments

RDobject

A readsData object with a filled output slot.

Value

A list of the tuned step sizes for sampling each of the parameters.

Examples

#pre -filtering to remove lowly expressed genes
ERCC <- ERCC[rowSums(ERCC)>0, ]
RD <- new('readsData', counts = ERCC)
steps <- 30
#30 steps are just for illustration here. Atleast 5000 steps are adequate.
BI <- denoiseq(RD, steps)
tunedStepSize(BI)

denoiSeq documentation built on May 2, 2019, 9:33 a.m.