tumors: Brain tumors data.

In denoiseR: Regularized Low Rank Matrix Estimation

Description

43 brain tumors and 356 continuous variables corresponding to the expression data and 1 categorical variable corresponding to the type of tumors (4 types).

Usage

data(tumors)

Format

A data frame with 43 rows and 357 columns. Rows represent the tumors, columns represent the expression and the type of tumor.

Details

A genetic data frame.

Source

M. de Tayrac, S. Le, M. Aubry, J. Mosser, and F. Husson. Simultaneous analysis of distinct omics data sets with integration of biological knowledge: Multiple factor analysis approach. BMC Genomics, 10(1):32, 2009.

Examples

data(tumors)
## Not run: 
res.ada <- adashrink(tumors[, -ncol(tumors)], method = "SURE")
res.hcpc <- HCPC(as.data.frame(res.ada$mu.hat), graph=F, consol = FALSE)
plot.HCPC(res.hcpc, choice = "map", draw.tree = "FALSE")

## End(Not run)

denoiseR documentation built on March 26, 2020, 8:10 p.m.