The denvax::build.project(...)
function creates a skeleton project your analysis.
The Makefile
provides the relationships between the various single step scripts, and a way to run them as a workflow. Alternatively, they can be run manually from the command line or in an application like Rstudio.
The simple.R
script demonstrates a simple start-to-finish analysis (using the Morrison 2010 data included in the package).
In either approach, the steps are:
fit.R
script in Rstudio, write your own script with the denvax::serofit
function, or use make with the target %-fit.json
in Makefile).synthesize.R
script, the denvax::synthetic.pop
function, or the target %-lh.rds
in Makefile)digest.R
script, the denvax::npxa
function, or the target %-npxa.rds
in Makefile)denvax::ROIcoeffs
function)denvax::ROI
function).The pub/
folder includes all the scripts necessary to generate the figures associated with the original publication of the analysis.
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.