detect: Analyzing Wildlife Data with Detection Error
Version 0.4-0

Models for analyzing site occupancy and count data models with detection error, including single-visit based models, conditional distance sampling and time-removal models. Package development was supported by the Alberta Biodiversity Monitoring Institute (www.abmi.ca) and the Boreal Avian Modelling Project (borealbirds.ca).

AuthorPeter Solymos [cre, aut], Monica Moreno [aut], Subhash R. Lele [aut]
Date of publication2016-03-03 08:25:21
MaintainerPeter Solymos <solymos@ualberta.ca>
LicenseGPL-2
Version0.4-0
URL https://github.com/psolymos/detect
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("detect")

Getting started

Package overview

Popular man pages

AUC: AUC ROC plot for fitted models
convertEDR: Conversion between truncated and unlimited effective...
datocc: Simulated example for occupancy model
detect-package: Analyzing Wildlife Data with Detection Error
hbootindex: Hierarchical bootstrap indices
internals: Internal functions
svabu: Single visit N-mixture abundance models
See all...

All man pages Function index File listing

Man pages

AUC: AUC ROC plot for fitted models
bootstrap: Do bootstrap and extract bootstrap results
cmulti: Conditional Multinomial Maximum Likelihood Estimation
convertEDR: Conversion between truncated and unlimited effective...
databu: Simulated example for abundance model
datocc: Simulated example for occupancy model
detect-package: Analyzing Wildlife Data with Detection Error
hbootindex: Hierarchical bootstrap indices
internals: Internal functions
load_BAM_QPAD: Load BAM QPAD parameter estimates and support functions
oven: Ovenbird abundances
svabu: Single visit N-mixture abundance models
svocc: ZI Binomial model with single visit

Functions

AUC Man page Source code
AUC.svocc Source code
bootstrap Man page Source code
bootstrap.svisit Source code
bymethod Source code
case.names.svisit Source code
checkDesign Source code
cmulti Man page Source code
cmulti.fit Man page Source code
cmulti.fit0 Man page Source code
cmulti2.fit Man page Source code
coef.summary.svabu Source code
coef.summary.svocc Source code
coef.svabu Source code
coef.svocc Source code
confint.svabu Source code
confint.svocc Source code
convertEDR Man page Source code
dFormula Source code
databu Man page
datocc Man page
detect Man page
detect-package Man page
drop.scope.svisit Man page Source code
drop1.svabu Source code
drop1.svocc Source code
extractAIC.svisit Source code
extractBOOT Man page Source code
extractBOOT.svabu Source code
extractBOOT.svocc Source code
extractMLE Man page Source code
extractMLE.svocc Source code
fitted.cmulti Man page Source code
fitted.svabu Source code
hbootindex Man page Source code
is.present Man page Source code
is.present.svisit Source code
load_BAM_QPAD Man page Source code
logLik.cmulti Source code
logLik.svisit Source code
logdmultinom Source code
model.frame.svisit Source code
model.matrix.svabu Source code
model.matrix.svocc Source code
onAttach Source code
onLoad Source code
onUnload Source code
oven Man page
plot.svabu Source code
predict.svabu Source code
predict.svocc Source code
predictMCMC Man page Source code
predictMCMC.svabu Source code
print.cmulti Source code
print.summary.cmulti Source code
print.summary.svabu Source code
print.summary.svocc Source code
print.svabu Source code
print.svocc Source code
rocplot Man page Source code
rocplot.svocc Source code
simulate.svabu Source code
simulate.svocc Source code
summary.cmulti Source code
summary.svabu Source code
summary.svocc Source code
svabu Man page Source code
svabu.fit Man page Source code
svabu.step Man page Source code
svabu_nb.fit Man page Source code
svisitFormula Source code
svocc Man page Source code
svocc.fit Man page Source code
svocc.step Man page Source code
terms.svisit Source code
update.formula.svisit Source code
update.svisit Source code
variable.names.svisit Source code
vcov.cmulti Source code
vcov.svabu Source code
vcov.svocc Source code
zif Man page Source code

Files

inst
inst/ChangeLog
NAMESPACE
data
data/oven.rda
data/databu.rda
data/datocc.rda
R
R/fitted.svabu.R
R/cmulti.fit.R
R/dFormula.R
R/vcov.cmulti.R
R/model.matrix.svocc.R
R/drop1.svocc.R
R/print.svabu.R
R/bootstrap.svisit.R
R/print.summary.svocc.R
R/bootstrap.R
R/coef.svocc.R
R/confint.svocc.R
R/simulate.svocc.R
R/cmulti.fit0.R
R/coef.svabu.R
R/extractAIC.svisit.R
R/variable.names.svisit.R
R/svabu.R
R/extractBOOT.svocc.R
R/print.summary.cmulti.R
R/svisitFormula.R
R/extractMLE.R
R/predict.svabu.R
R/AUC.R
R/AUC.svocc.R
R/checkDesign.R
R/coef.summary.svabu.R
R/predictMCMC.svabu.R
R/print.summary.svabu.R
R/rocplot.svocc.R
R/plot.svabu.R
R/fitted.cmulti.R
R/svabu.fit.R
R/rocplot.R
R/svocc.fit.R
R/extractBOOT.svabu.R
R/cmulti2.fit.R
R/vcov.svocc.R
R/model.frame.svisit.R
R/update.svisit.R
R/svocc.step.R
R/vcov.svabu.R
R/print.cmulti.R
R/extractMLE.svocc.R
R/summary.svocc.R
R/logLik.svisit.R
R/convertEDR.R
R/svabu.step.R
R/is.present.svisit.R
R/print.svocc.R
R/terms.svisit.R
R/svabu_nb.fit.R
R/predictMCMC.R
R/summary.cmulti.R
R/coef.summary.svocc.R
R/predict.svocc.R
R/confint.svabu.R
R/svocc.R
R/drop.scope.svocc.R
R/update.formula.svisit.R
R/is.present.R
R/logdmultinom.R
R/model.matrix.svabu.R
R/hbootindex.R
R/summary.svabu.R
R/extractBOOT.R
R/logLik.cmulti.R
R/drop1.svabu.R
R/bymethod.R
R/zzz.R
R/load_BAM_QPAD.R
R/case.names.svisit.R
R/zif.R
R/cmulti.R
R/simulate.svabu.R
MD5
DESCRIPTION
man
man/databu.Rd
man/svocc.Rd
man/bootstrap.Rd
man/datocc.Rd
man/cmulti.Rd
man/load_BAM_QPAD.Rd
man/AUC.Rd
man/convertEDR.Rd
man/detect-package.Rd
man/oven.Rd
man/internals.Rd
man/svabu.Rd
man/hbootindex.Rd
detect documentation built on May 20, 2017, 1:08 a.m.