devRate: Quantify Relationship Between Development Rate and Temperature in Ectotherms
Version 0.1.2

A set of functions to ease quantifying the relationship between development rate and temperature. The package comprises a set of models and estimated parameters borrowed from a literature review in ectotherms (mostly arthropods).

Browse man pages Browse package API and functions Browse package files

AuthorFrancois Rebaudo [aut, cre], Quentin Struelens [aut]
Date of publication2017-05-09 21:23:44 UTC
MaintainerFrancois Rebaudo <francois.rebaudo@ird.fr>
LicenseGPL-2
Version0.1.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("devRate")

Man pages

analytis_77: Analytis equation of development rate as a function of...
bayoh_03: Bayoh and Lindsay equation of development rate as a function...
beta_95: Beta equation of development rate as a function of...
bieri1_83: Bieri equation 1 of development rate as a function of...
briere1_99: Briere et al equation 1 of development rate as a function of...
briere2_99: Briere et al equation 2 of development rate as a function of...
campbell_74: Campbell et al. equation of development rate as a function of...
compDifDays: Compute the inverse of number of days between dates
compDifDaysDf: Compute the inverse of number of days between dates from a...
damos_08: Simplified beta type equation of development rate as a...
damos_11: Inverse second-order polynomial equation of development rate...
davidson_44: Davidson equation of development rate as a function of...
devRate: devRate: A package for quantifying the relationship between...
devRateEqList: The list of all available equations of development rate as a...
devRateFind: Find models for species
devRateIBM: Forecast ectotherm phenology as a function of temperature and...
devRateIBMgen: Number of generations
devRateIBMPlot: Plot phenology table
devRateInfo: Display information about an equation
devRateMap: Predict development rate from a a map of temperatures
devRateModel: Compute non-linear regression
devRatePlot: Plot the empirical points and the regression
devRatePlotInfo: Plot parameter estimates from the literature
devRatePrint: Report model output from the NLS fit
harcourtYee_82: Harcourt and Yee equation of development rate as a function...
hilbertLogan_83: Holling type III equation of development rate as a function...
janisch_32: Janisch equation of development rate as a function of...
kontodimas_04: Kontodimas et al. equation of development rate as a function...
lactin1_95: Lactin et al. equation 1 of development rate as a function of...
lactin2_95: Lactin et al. equation 2 of development rate as a function of...
lamb_92: Lamb equation of development rate as a function of...
logan10_76: Logan et al. equation 10 of development rate as a function of...
logan6_76: Logan et al. equation 6 of development rate as a function of...
perf2_11: Performance-2 equation of development rate as a function of...
poly2: Second-order polynomial equation of development rate as a...
poly4: Fourth-order polynomial equation of development rate as a...
ratkowsky_82: Ratkowsky equation of development rate as a function of...
regniere_12: Regniere equation of development rate as a function of...
rootsq_82: Root square equation of development rate as a function of...
schoolfield_81: Schoolfield et al. equation of development rate as a function...
schoolfieldHigh_81: Schoolfield et al. equation of development rate as a function...
schoolfieldLow_81: Schoolfield et al. equation of development rate as a function...
sharpeDeMichele_77: Sharpe and DeMichele equation of development rate as a...
shi_11: Shi equation of development rate as a function of...
stinner_74: Stinner et al equation of development rate as a function of...
taylor_81: Taylor equation of development rate as a function of...
wagner_88: Hagstrum et Milliken equation of development rate as a...
wang_82: Wang et al. equation of development rate as a function of...
wangengel_98: Wang and Engel equation of development rate as a function of...

Functions

analytis_77 Man page
bayoh_03 Man page
beta_95 Man page
bieri1_83 Man page
briere1_99 Man page
briere2_99 Man page
campbell_74 Man page
compDifDays Man page Source code
compDifDaysDf Man page Source code
damos_08 Man page
damos_11 Man page
davidson_44 Man page
devRate Man page
devRate-package Man page
devRateEqList Man page
devRateFind Man page Source code
devRateIBM Man page Source code
devRateIBMPlot Man page Source code
devRateIBMgen Man page Source code
devRateInfo Man page Source code
devRateMap Man page Source code
devRateModel Man page Source code
devRatePlot Man page Source code
devRatePlotInfo Man page Source code
devRatePrint Man page Source code
harcourtYee_82 Man page
hilbertLogan_83 Man page
janisch_32 Man page
kontodimas_04 Man page
lactin1_95 Man page
lactin2_95 Man page
lamb_92 Man page
logan10_76 Man page
logan6_76 Man page
perf2_11 Man page
poly2 Man page
poly4 Man page
ratkowsky_82 Man page
regniere_12 Man page
rootsq_82 Man page
schoolfieldHigh_81 Man page
schoolfieldLow_81 Man page
schoolfield_81 Man page
sharpeDeMichele_77 Man page
shi_11 Man page
stinner_74 Man page
taylor_81 Man page
wagner_88 Man page
wang_82 Man page
wangengel_98 Man page

Files

inst
inst/doc
inst/doc/example_tropical.html
inst/doc/example_tropical.Rmd
tests
tests/testthat.R
tests/testthat
tests/testthat/test_devRateModel.R
NAMESPACE
NEWS.md
data
data/logan6_76.RData
data/kontodimas_04.RData
data/lactin1_95.RData
data/damos_08.RData
data/campbell_74.RData
data/logan10_76.RData
data/schoolfieldHigh_81.RData
data/damos_11.RData
data/stinner_74.RData
data/bieri1_83.RData
data/perf2_11.RData
data/analytis_77.RData
data/schoolfieldLow_81.RData
data/regniere_12.RData
data/hilbertLogan_83.RData
data/briere1_99.RData
data/wagner_88.RData
data/beta_95.RData
data/taylor_81.RData
data/shi_11.RData
data/janisch_32.RData
data/lactin2_95.RData
data/wang_82.RData
data/poly4.RData
data/sharpeDeMichele_77.RData
data/schoolfield_81.RData
data/poly2.RData
data/wangengel_98.RData
data/harcourtYee_82.RData
data/ratkowsky_82.RData
data/lamb_92.RData
data/devRateEqList.RData
data/rootsq_82.RData
data/davidson_44.RData
data/bayoh_03.RData
data/briere2_99.RData
R
R/devRate_info.R
R/devRate_utils.R
R/devRate_plot.R
R/data.R
R/devRate.R
R/devRate_pheno.R
R/devRate_map.R
R/devRate_nls.R
R/devRate_find.R
vignettes
vignettes/example_tropical.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/bayoh_03.Rd
man/devRatePlot.Rd
man/kontodimas_04.Rd
man/regniere_12.Rd
man/devRateModel.Rd
man/briere2_99.Rd
man/devRatePrint.Rd
man/compDifDays.Rd
man/harcourtYee_82.Rd
man/lactin2_95.Rd
man/shi_11.Rd
man/devRateIBMPlot.Rd
man/hilbertLogan_83.Rd
man/sharpeDeMichele_77.Rd
man/perf2_11.Rd
man/compDifDaysDf.Rd
man/stinner_74.Rd
man/ratkowsky_82.Rd
man/lactin1_95.Rd
man/devRateFind.Rd
man/devRate.Rd
man/lamb_92.Rd
man/devRateIBM.Rd
man/devRateInfo.Rd
man/devRateMap.Rd
man/logan10_76.Rd
man/taylor_81.Rd
man/janisch_32.Rd
man/rootsq_82.Rd
man/logan6_76.Rd
man/wang_82.Rd
man/bieri1_83.Rd
man/poly2.Rd
man/schoolfieldHigh_81.Rd
man/poly4.Rd
man/schoolfieldLow_81.Rd
man/damos_11.Rd
man/devRateEqList.Rd
man/davidson_44.Rd
man/damos_08.Rd
man/wangengel_98.Rd
man/beta_95.Rd
man/analytis_77.Rd
man/campbell_74.Rd
man/briere1_99.Rd
man/schoolfield_81.Rd
man/wagner_88.Rd
man/devRateIBMgen.Rd
man/devRatePlotInfo.Rd
devRate documentation built on May 19, 2017, 5:48 p.m.