devRate: Quantify Relationship Between Developmental Rate and Temperature in Ectotherms

A set of functions to ease quantifying the relationship between developmental rate and temperature. The package comprises a set of models and estimated parameters borrowed from a literature review in ectotherms.

AuthorFrancois Rebaudo [aut, cre], Quentin Struelens [aut]
Date of publication2017-01-23 06:35:23
MaintainerFrancois Rebaudo <francois.rebaudo@ird.fr>
LicenseGPL-2
Version0.1.1

View on CRAN

Man pages

analytis_77: Analytis equation of development rate as a function of...

bayoh_03: Bayoh and Lindsay equation of development rate as a function...

beta_95: Beta equation of development rate as a function of...

bieri1_83: Bieri equation 1 of development rate as a function of...

briere1_99: Briere et al equation 1 of development rate as a function of...

briere2_99: Briere et al equation 2 of development rate as a function of...

campbell_74: Campbell et al. equation of development rate as a function of...

compDifDays: Compute the inverse of number of days between dates

compDifDaysDf: Compute the inverse of number of days between dates from a...

damos_08: Simplified beta type equation of development rate as a...

damos_11: Inverse second-order polynomial equation of development rate...

davidson_44: Davidson equation of development rate as a function of...

devRate: devRate: A package for quantifying the relationship between...

devRateEqList: The list of all available equations of development rate as a...

devRateFind: Find models for species

devRateIBM: Forecast ectotherm phenology as a function of temperature and...

devRateIBMgen: Number of generations

devRateIBMPlot: Plot phenology table

devRateInfo: Display information about an equation

devRateMap: Predict development rate from a a map of temperatures

devRateModel: Compute non-linear regression

devRatePlot: Plot the empirical points and the regression

devRatePlotInfo: Plot parameter estimates from the literature

devRatePrint: Report model output from the NLS fit

harcourtYee_82: Harcourt and Yee equation of development rate as a function...

hilbertLogan_83: Holling type III equation of development rate as a function...

janisch_32: Janisch equation of development rate as a function of...

kontodimas_04: Kontodimas et al. equation of development rate as a function...

lactin1_95: Lactin et al. equation 1 of development rate as a function of...

lactin2_95: Lactin et al. equation 2 of development rate as a function of...

lamb_92: Lamb equation of development rate as a function of...

logan10_76: Logan et al. equation 10 of development rate as a function of...

logan6_76: Logan et al. equation 6 of development rate as a function of...

perf2_11: Performance-2 equation of development rate as a function of...

poly2: Second-order polynomial equation of development rate as a...

poly4: Fourth-order polynomial equation of development rate as a...

ratkowsky_82: Ratkowsky equation of development rate as a function of...

regniere_12: Regniere equation of development rate as a function of...

rootsq_82: Root square equation of development rate as a function of...

schoolfield_81: Schoolfield et al. equation of development rate as a function...

schoolfieldHigh_81: Schoolfield et al. equation of development rate as a function...

schoolfieldLow_81: Schoolfield et al. equation of development rate as a function...

sharpeDeMichele_77: Sharpe and DeMichele equation of development rate as a...

shi_11: Shi equation of development rate as a function of...

stinner_74: Stinner et al equation of development rate as a function of...

taylor_81: Taylor equation of development rate as a function of...

wagner_88: Hagstrum et Milliken equation of development rate as a...

wang_82: Wang et al. equation of development rate as a function of...

wangengel_98: Wang and Engel equation of development rate as a function of...

Functions

analytis_77 Man page
bayoh_03 Man page
beta_95 Man page
bieri1_83 Man page
briere1_99 Man page
briere2_99 Man page
campbell_74 Man page
compDifDays Man page
compDifDaysDf Man page
damos_08 Man page
damos_11 Man page
davidson_44 Man page
devRate Man page
devRateEqList Man page
devRateFind Man page
devRateIBM Man page
devRateIBMgen Man page
devRateIBMPlot Man page
devRateInfo Man page
devRateMap Man page
devRateModel Man page
devRate-package Man page
devRatePlot Man page
devRatePlotInfo Man page
devRatePrint Man page
harcourtYee_82 Man page
hilbertLogan_83 Man page
janisch_32 Man page
kontodimas_04 Man page
lactin1_95 Man page
lactin2_95 Man page
lamb_92 Man page
logan10_76 Man page
logan6_76 Man page
perf2_11 Man page
poly2 Man page
poly4 Man page
ratkowsky_82 Man page
regniere_12 Man page
rootsq_82 Man page
schoolfield_81 Man page
schoolfieldHigh_81 Man page
schoolfieldLow_81 Man page
sharpeDeMichele_77 Man page
shi_11 Man page
stinner_74 Man page
taylor_81 Man page
wagner_88 Man page
wang_82 Man page
wangengel_98 Man page

Files

devRate
devRate/inst
devRate/inst/doc
devRate/inst/doc/example_tropical.html
devRate/inst/doc/example_tropical.Rmd
devRate/tests
devRate/tests/testthat.R
devRate/tests/testthat
devRate/tests/testthat/test_devRateModel.R
devRate/NAMESPACE
devRate/NEWS.md
devRate/data
devRate/data/logan6_76.RData
devRate/data/kontodimas_04.RData
devRate/data/lactin1_95.RData
devRate/data/damos_08.RData
devRate/data/campbell_74.RData
devRate/data/logan10_76.RData
devRate/data/schoolfieldHigh_81.RData
devRate/data/damos_11.RData
devRate/data/stinner_74.RData
devRate/data/bieri1_83.RData
devRate/data/perf2_11.RData
devRate/data/analytis_77.RData
devRate/data/schoolfieldLow_81.RData
devRate/data/regniere_12.RData
devRate/data/hilbertLogan_83.RData
devRate/data/briere1_99.RData
devRate/data/wagner_88.RData
devRate/data/beta_95.RData
devRate/data/taylor_81.RData
devRate/data/shi_11.RData
devRate/data/janisch_32.RData
devRate/data/lactin2_95.RData
devRate/data/wang_82.RData
devRate/data/poly4.RData
devRate/data/sharpeDeMichele_77.RData
devRate/data/schoolfield_81.RData
devRate/data/poly2.RData
devRate/data/wangengel_98.RData
devRate/data/harcourtYee_82.RData
devRate/data/ratkowsky_82.RData
devRate/data/lamb_92.RData
devRate/data/devRateEqList.RData
devRate/data/rootsq_82.RData
devRate/data/davidson_44.RData
devRate/data/bayoh_03.RData
devRate/data/briere2_99.RData
devRate/R
devRate/R/devRate_info.R devRate/R/devRate_utils.R devRate/R/devRate_plot.R devRate/R/data.R devRate/R/devRate.R devRate/R/devRate_pheno.R devRate/R/devRate_map.R devRate/R/devRate_nls.R devRate/R/devRate_find.R
devRate/vignettes
devRate/vignettes/example_tropical.Rmd
devRate/README.md
devRate/MD5
devRate/build
devRate/build/vignette.rds
devRate/DESCRIPTION
devRate/man
devRate/man/bayoh_03.Rd devRate/man/devRatePlot.Rd devRate/man/kontodimas_04.Rd devRate/man/regniere_12.Rd devRate/man/devRateModel.Rd devRate/man/briere2_99.Rd devRate/man/devRatePrint.Rd devRate/man/compDifDays.Rd devRate/man/harcourtYee_82.Rd devRate/man/lactin2_95.Rd devRate/man/shi_11.Rd devRate/man/devRateIBMPlot.Rd devRate/man/hilbertLogan_83.Rd devRate/man/sharpeDeMichele_77.Rd devRate/man/perf2_11.Rd devRate/man/compDifDaysDf.Rd devRate/man/stinner_74.Rd devRate/man/ratkowsky_82.Rd devRate/man/lactin1_95.Rd devRate/man/devRateFind.Rd devRate/man/devRate.Rd devRate/man/lamb_92.Rd devRate/man/devRateIBM.Rd devRate/man/devRateInfo.Rd devRate/man/devRateMap.Rd devRate/man/logan10_76.Rd devRate/man/taylor_81.Rd devRate/man/janisch_32.Rd devRate/man/rootsq_82.Rd devRate/man/logan6_76.Rd devRate/man/wang_82.Rd devRate/man/bieri1_83.Rd devRate/man/poly2.Rd devRate/man/schoolfieldHigh_81.Rd devRate/man/poly4.Rd devRate/man/schoolfieldLow_81.Rd devRate/man/damos_11.Rd devRate/man/devRateEqList.Rd devRate/man/davidson_44.Rd devRate/man/damos_08.Rd devRate/man/wangengel_98.Rd devRate/man/beta_95.Rd devRate/man/analytis_77.Rd devRate/man/campbell_74.Rd devRate/man/briere1_99.Rd devRate/man/schoolfield_81.Rd devRate/man/wagner_88.Rd devRate/man/devRateIBMgen.Rd devRate/man/devRatePlotInfo.Rd

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