inst/doc/Actgram_diurnality_avg_activity.R

In digiRhythm: Analyzing Animal's Rhythmicity

## ---- include = FALSE---------------------------------------------------------
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>", fig.width = 7
)

## ----loading------------------------------------------------------------------
library(digiRhythm)
data <- digiRhythm::df691b_1
data <- remove_activity_outliers(data)
data <- resample_dgm(data, 15)
activity <- names(data)[2]
head(data)

## ----actogram-----------------------------------------------------------------
start <- "2020-08-25" # year-month-day
end <- "2020-10-11" # year-month-day -->
activity_alias <- "Motion Index"
# save <- 'sample_results/actogram' #if NULL, don't save the image
my_actogram <- actogram(data, activity, activity_alias, start, end, save = NULL)

## ----daily_average_activity---------------------------------------------------
start <- "2020-08-25" # year-month-day
end <- "2020-10-11" # year-month-day -->
activity_alias <- "Motion Index"
# save <- 'sample_results/actogram' #if NULL, don't save the image
my_daa <- daily_average_activity(data, activity,
  activity_alias,
  start,
  end,
  save = NULL
)

## ----diurnality---------------------------------------------------------------
day_time <- c("06:30:00", "16:30:00")
night_time <- c("18:00:00", "T05:00:00")
my_di <- diurnality(data, activity, day_time, night_time, save = NULL)