EdgelistFill: Ensure an edgelist has all dyads and a column of weights.
In dils: Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links.
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
Given a matrix or data.frame edgelist, fill in all
possible edges not already listed with a weight of 0 or
the value of fillBlanksWith.
Usage
1
EdgelistFill(elist, fillBlanksWith = 0, nodelist)
Arguments
elist
data.frame or matrix, see 'Details' for
formatting assumptions.
fillBlanksWith
numeric, default weight for edges
not already listed in elist.
nodelist
character, optional list of node names.
Details
The elist can be either a data.frame or a matrix
with either 2 or 3 columns. Each row is an edge. The
first column lists the node the edge is 'from' and the
second column lists the node the edge is 'to'. If there
is a third column, it lists the weight of the edge.
Value
data.frame, full list of all possible edges with weights
for each in third column.
Author(s)
Stephen R. Haptonstahl srh@haptonstahl.org
References
https://github.com/shaptonstahl/
Examples
1
2
3
4
5
6
7
8
g <- erdos.renyi.game(10, 2/10)
EdgelistFill(get.edgelist(g))
EdgelistFill(get.edgelist(g), nodelist=1:10)
E(g)$weight <- runif(ecount(g))
el <- cbind(get.edgelist(g), E(g)$weight)
EdgelistFill(el)
EdgelistFill(el, nodelist=1:10)
Example output
Loading required package: igraph
Attaching package: ‘igraph’
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
Loading required package: Rcpp
fromnode tonode weight
1 1 1 0
2 1 2 0
3 1 3 1
4 1 4 0
5 1 5 0
6 1 6 0
7 1 7 0
8 1 8 1
9 1 9 0
10 1 10 0
11 2 1 0
12 2 2 0
13 2 3 0
14 2 4 0
15 2 5 1
16 2 6 0
17 2 7 0
18 2 8 0
19 2 9 0
20 2 10 1
21 3 1 0
22 3 2 0
23 3 3 0
24 3 4 0
25 3 5 0
26 3 6 1
27 3 7 0
28 3 8 1
29 3 9 0
30 3 10 0
31 4 1 0
32 4 2 0
33 4 3 0
34 4 4 0
35 4 5 1
36 4 6 0
37 4 7 0
38 4 8 0
39 4 9 0
40 4 10 0
41 5 1 0
42 5 2 0
43 5 3 0
44 5 4 0
45 5 5 0
46 5 6 0
47 5 7 0
48 5 8 1
49 5 9 0
50 5 10 0
51 6 1 0
52 6 2 0
53 6 3 0
54 6 4 0
55 6 5 0
56 6 6 0
57 6 7 0
58 6 8 0
59 6 9 0
60 6 10 0
61 7 1 0
62 7 2 0
63 7 3 0
64 7 4 0
65 7 5 0
66 7 6 0
67 7 7 0
68 7 8 0
69 7 9 1
70 7 10 0
71 8 1 0
72 8 2 0
73 8 3 0
74 8 4 0
75 8 5 0
76 8 6 0
77 8 7 0
78 8 8 0
79 8 9 0
80 8 10 0
81 9 1 0
82 9 2 0
83 9 3 0
84 9 4 0
85 9 5 0
86 9 6 0
87 9 7 0
88 9 8 0
89 9 9 0
90 9 10 1
91 10 1 0
92 10 2 0
93 10 3 0
94 10 4 0
95 10 5 0
96 10 6 0
97 10 7 0
98 10 8 0
99 10 9 0
100 10 10 0
fromnode tonode weight
1 1 1 0
2 1 2 0
3 1 3 1
4 1 4 0
5 1 5 0
6 1 6 0
7 1 7 0
8 1 8 1
9 1 9 0
10 1 10 0
11 2 1 0
12 2 2 0
13 2 3 0
14 2 4 0
15 2 5 1
16 2 6 0
17 2 7 0
18 2 8 0
19 2 9 0
20 2 10 1
21 3 1 0
22 3 2 0
23 3 3 0
24 3 4 0
25 3 5 0
26 3 6 1
27 3 7 0
28 3 8 1
29 3 9 0
30 3 10 0
31 4 1 0
32 4 2 0
33 4 3 0
34 4 4 0
35 4 5 1
36 4 6 0
37 4 7 0
38 4 8 0
39 4 9 0
40 4 10 0
41 5 1 0
42 5 2 0
43 5 3 0
44 5 4 0
45 5 5 0
46 5 6 0
47 5 7 0
48 5 8 1
49 5 9 0
50 5 10 0
51 6 1 0
52 6 2 0
53 6 3 0
54 6 4 0
55 6 5 0
56 6 6 0
57 6 7 0
58 6 8 0
59 6 9 0
60 6 10 0
61 7 1 0
62 7 2 0
63 7 3 0
64 7 4 0
65 7 5 0
66 7 6 0
67 7 7 0
68 7 8 0
69 7 9 1
70 7 10 0
71 8 1 0
72 8 2 0
73 8 3 0
74 8 4 0
75 8 5 0
76 8 6 0
77 8 7 0
78 8 8 0
79 8 9 0
80 8 10 0
81 9 1 0
82 9 2 0
83 9 3 0
84 9 4 0
85 9 5 0
86 9 6 0
87 9 7 0
88 9 8 0
89 9 9 0
90 9 10 1
91 10 1 0
92 10 2 0
93 10 3 0
94 10 4 0
95 10 5 0
96 10 6 0
97 10 7 0
98 10 8 0
99 10 9 0
100 10 10 0
fromnode tonode weight
1 1 1 0.00000000
2 1 2 0.00000000
3 1 3 0.70840076
4 1 4 0.00000000
5 1 5 0.00000000
6 1 6 0.00000000
7 1 7 0.00000000
8 1 8 0.27267918
9 1 9 0.00000000
10 1 10 0.00000000
11 2 1 0.00000000
12 2 2 0.00000000
13 2 3 0.00000000
14 2 4 0.00000000
15 2 5 0.55328424
16 2 6 0.00000000
17 2 7 0.00000000
18 2 8 0.00000000
19 2 9 0.00000000
20 2 10 0.62035742
21 3 1 0.00000000
22 3 2 0.00000000
23 3 3 0.00000000
24 3 4 0.00000000
25 3 5 0.00000000
26 3 6 0.20929305
27 3 7 0.00000000
28 3 8 0.69755197
29 3 9 0.00000000
30 3 10 0.00000000
31 4 1 0.00000000
32 4 2 0.00000000
33 4 3 0.00000000
34 4 4 0.00000000
35 4 5 0.02630632
36 4 6 0.00000000
37 4 7 0.00000000
38 4 8 0.00000000
39 4 9 0.00000000
40 4 10 0.00000000
41 5 1 0.00000000
42 5 2 0.00000000
43 5 3 0.00000000
44 5 4 0.00000000
45 5 5 0.00000000
46 5 6 0.00000000
47 5 7 0.00000000
48 5 8 0.34808191
49 5 9 0.00000000
50 5 10 0.00000000
51 6 1 0.00000000
52 6 2 0.00000000
53 6 3 0.00000000
54 6 4 0.00000000
55 6 5 0.00000000
56 6 6 0.00000000
57 6 7 0.00000000
58 6 8 0.00000000
59 6 9 0.00000000
60 6 10 0.00000000
61 7 1 0.00000000
62 7 2 0.00000000
63 7 3 0.00000000
64 7 4 0.00000000
65 7 5 0.00000000
66 7 6 0.00000000
67 7 7 0.00000000
68 7 8 0.00000000
69 7 9 0.81578597
70 7 10 0.00000000
71 8 1 0.00000000
72 8 2 0.00000000
73 8 3 0.00000000
74 8 4 0.00000000
75 8 5 0.00000000
76 8 6 0.00000000
77 8 7 0.00000000
78 8 8 0.00000000
79 8 9 0.00000000
80 8 10 0.00000000
81 9 1 0.00000000
82 9 2 0.00000000
83 9 3 0.00000000
84 9 4 0.00000000
85 9 5 0.00000000
86 9 6 0.00000000
87 9 7 0.00000000
88 9 8 0.00000000
89 9 9 0.00000000
90 9 10 0.31717559
91 10 1 0.00000000
92 10 2 0.00000000
93 10 3 0.00000000
94 10 4 0.00000000
95 10 5 0.00000000
96 10 6 0.00000000
97 10 7 0.00000000
98 10 8 0.00000000
99 10 9 0.00000000
100 10 10 0.00000000
fromnode tonode weight
1 1 1 0.00000000
2 1 2 0.00000000
3 1 3 0.70840076
4 1 4 0.00000000
5 1 5 0.00000000
6 1 6 0.00000000
7 1 7 0.00000000
8 1 8 0.27267918
9 1 9 0.00000000
10 1 10 0.00000000
11 2 1 0.00000000
12 2 2 0.00000000
13 2 3 0.00000000
14 2 4 0.00000000
15 2 5 0.55328424
16 2 6 0.00000000
17 2 7 0.00000000
18 2 8 0.00000000
19 2 9 0.00000000
20 2 10 0.62035742
21 3 1 0.00000000
22 3 2 0.00000000
23 3 3 0.00000000
24 3 4 0.00000000
25 3 5 0.00000000
26 3 6 0.20929305
27 3 7 0.00000000
28 3 8 0.69755197
29 3 9 0.00000000
30 3 10 0.00000000
31 4 1 0.00000000
32 4 2 0.00000000
33 4 3 0.00000000
34 4 4 0.00000000
35 4 5 0.02630632
36 4 6 0.00000000
37 4 7 0.00000000
38 4 8 0.00000000
39 4 9 0.00000000
40 4 10 0.00000000
41 5 1 0.00000000
42 5 2 0.00000000
43 5 3 0.00000000
44 5 4 0.00000000
45 5 5 0.00000000
46 5 6 0.00000000
47 5 7 0.00000000
48 5 8 0.34808191
49 5 9 0.00000000
50 5 10 0.00000000
51 6 1 0.00000000
52 6 2 0.00000000
53 6 3 0.00000000
54 6 4 0.00000000
55 6 5 0.00000000
56 6 6 0.00000000
57 6 7 0.00000000
58 6 8 0.00000000
59 6 9 0.00000000
60 6 10 0.00000000
61 7 1 0.00000000
62 7 2 0.00000000
63 7 3 0.00000000
64 7 4 0.00000000
65 7 5 0.00000000
66 7 6 0.00000000
67 7 7 0.00000000
68 7 8 0.00000000
69 7 9 0.81578597
70 7 10 0.00000000
71 8 1 0.00000000
72 8 2 0.00000000
73 8 3 0.00000000
74 8 4 0.00000000
75 8 5 0.00000000
76 8 6 0.00000000
77 8 7 0.00000000
78 8 8 0.00000000
79 8 9 0.00000000
80 8 10 0.00000000
81 9 1 0.00000000
82 9 2 0.00000000
83 9 3 0.00000000
84 9 4 0.00000000
85 9 5 0.00000000
86 9 6 0.00000000
87 9 7 0.00000000
88 9 8 0.00000000
89 9 9 0.00000000
90 9 10 0.31717559
91 10 1 0.00000000
92 10 2 0.00000000
93 10 3 0.00000000
94 10 4 0.00000000
95 10 5 0.00000000
96 10 6 0.00000000
97 10 7 0.00000000
98 10 8 0.00000000
99 10 9 0.00000000
100 10 10 0.00000000
dils documentation built on May 2, 2019, 8:28 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) References Examples
Description
Given a matrix or data.frame edgelist, fill in all
possible edges not already listed with a weight of 0 or
the value of fillBlanksWith.
Usage
1 | EdgelistFill(elist, fillBlanksWith = 0, nodelist)
|
Arguments
elist |
data.frame or matrix, see 'Details' for formatting assumptions. |
fillBlanksWith |
numeric, default weight for edges not already listed in elist. |
nodelist |
character, optional list of node names. |
Details
The elist can be either a data.frame or a matrix
with either 2 or 3 columns. Each row is an edge. The
first column lists the node the edge is 'from' and the
second column lists the node the edge is 'to'. If there
is a third column, it lists the weight of the edge.
Value
data.frame, full list of all possible edges with weights for each in third column.
Author(s)
Stephen R. Haptonstahl srh@haptonstahl.org
References
https://github.com/shaptonstahl/
Examples
1 2 3 4 5 6 7 8 | g <- erdos.renyi.game(10, 2/10)
EdgelistFill(get.edgelist(g))
EdgelistFill(get.edgelist(g), nodelist=1:10)
E(g)$weight <- runif(ecount(g))
el <- cbind(get.edgelist(g), E(g)$weight)
EdgelistFill(el)
EdgelistFill(el, nodelist=1:10)
|
Example output
Loading required package: igraph
Attaching package: ‘igraph’
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
Loading required package: Rcpp
fromnode tonode weight
1 1 1 0
2 1 2 0
3 1 3 1
4 1 4 0
5 1 5 0
6 1 6 0
7 1 7 0
8 1 8 1
9 1 9 0
10 1 10 0
11 2 1 0
12 2 2 0
13 2 3 0
14 2 4 0
15 2 5 1
16 2 6 0
17 2 7 0
18 2 8 0
19 2 9 0
20 2 10 1
21 3 1 0
22 3 2 0
23 3 3 0
24 3 4 0
25 3 5 0
26 3 6 1
27 3 7 0
28 3 8 1
29 3 9 0
30 3 10 0
31 4 1 0
32 4 2 0
33 4 3 0
34 4 4 0
35 4 5 1
36 4 6 0
37 4 7 0
38 4 8 0
39 4 9 0
40 4 10 0
41 5 1 0
42 5 2 0
43 5 3 0
44 5 4 0
45 5 5 0
46 5 6 0
47 5 7 0
48 5 8 1
49 5 9 0
50 5 10 0
51 6 1 0
52 6 2 0
53 6 3 0
54 6 4 0
55 6 5 0
56 6 6 0
57 6 7 0
58 6 8 0
59 6 9 0
60 6 10 0
61 7 1 0
62 7 2 0
63 7 3 0
64 7 4 0
65 7 5 0
66 7 6 0
67 7 7 0
68 7 8 0
69 7 9 1
70 7 10 0
71 8 1 0
72 8 2 0
73 8 3 0
74 8 4 0
75 8 5 0
76 8 6 0
77 8 7 0
78 8 8 0
79 8 9 0
80 8 10 0
81 9 1 0
82 9 2 0
83 9 3 0
84 9 4 0
85 9 5 0
86 9 6 0
87 9 7 0
88 9 8 0
89 9 9 0
90 9 10 1
91 10 1 0
92 10 2 0
93 10 3 0
94 10 4 0
95 10 5 0
96 10 6 0
97 10 7 0
98 10 8 0
99 10 9 0
100 10 10 0
fromnode tonode weight
1 1 1 0
2 1 2 0
3 1 3 1
4 1 4 0
5 1 5 0
6 1 6 0
7 1 7 0
8 1 8 1
9 1 9 0
10 1 10 0
11 2 1 0
12 2 2 0
13 2 3 0
14 2 4 0
15 2 5 1
16 2 6 0
17 2 7 0
18 2 8 0
19 2 9 0
20 2 10 1
21 3 1 0
22 3 2 0
23 3 3 0
24 3 4 0
25 3 5 0
26 3 6 1
27 3 7 0
28 3 8 1
29 3 9 0
30 3 10 0
31 4 1 0
32 4 2 0
33 4 3 0
34 4 4 0
35 4 5 1
36 4 6 0
37 4 7 0
38 4 8 0
39 4 9 0
40 4 10 0
41 5 1 0
42 5 2 0
43 5 3 0
44 5 4 0
45 5 5 0
46 5 6 0
47 5 7 0
48 5 8 1
49 5 9 0
50 5 10 0
51 6 1 0
52 6 2 0
53 6 3 0
54 6 4 0
55 6 5 0
56 6 6 0
57 6 7 0
58 6 8 0
59 6 9 0
60 6 10 0
61 7 1 0
62 7 2 0
63 7 3 0
64 7 4 0
65 7 5 0
66 7 6 0
67 7 7 0
68 7 8 0
69 7 9 1
70 7 10 0
71 8 1 0
72 8 2 0
73 8 3 0
74 8 4 0
75 8 5 0
76 8 6 0
77 8 7 0
78 8 8 0
79 8 9 0
80 8 10 0
81 9 1 0
82 9 2 0
83 9 3 0
84 9 4 0
85 9 5 0
86 9 6 0
87 9 7 0
88 9 8 0
89 9 9 0
90 9 10 1
91 10 1 0
92 10 2 0
93 10 3 0
94 10 4 0
95 10 5 0
96 10 6 0
97 10 7 0
98 10 8 0
99 10 9 0
100 10 10 0
fromnode tonode weight
1 1 1 0.00000000
2 1 2 0.00000000
3 1 3 0.70840076
4 1 4 0.00000000
5 1 5 0.00000000
6 1 6 0.00000000
7 1 7 0.00000000
8 1 8 0.27267918
9 1 9 0.00000000
10 1 10 0.00000000
11 2 1 0.00000000
12 2 2 0.00000000
13 2 3 0.00000000
14 2 4 0.00000000
15 2 5 0.55328424
16 2 6 0.00000000
17 2 7 0.00000000
18 2 8 0.00000000
19 2 9 0.00000000
20 2 10 0.62035742
21 3 1 0.00000000
22 3 2 0.00000000
23 3 3 0.00000000
24 3 4 0.00000000
25 3 5 0.00000000
26 3 6 0.20929305
27 3 7 0.00000000
28 3 8 0.69755197
29 3 9 0.00000000
30 3 10 0.00000000
31 4 1 0.00000000
32 4 2 0.00000000
33 4 3 0.00000000
34 4 4 0.00000000
35 4 5 0.02630632
36 4 6 0.00000000
37 4 7 0.00000000
38 4 8 0.00000000
39 4 9 0.00000000
40 4 10 0.00000000
41 5 1 0.00000000
42 5 2 0.00000000
43 5 3 0.00000000
44 5 4 0.00000000
45 5 5 0.00000000
46 5 6 0.00000000
47 5 7 0.00000000
48 5 8 0.34808191
49 5 9 0.00000000
50 5 10 0.00000000
51 6 1 0.00000000
52 6 2 0.00000000
53 6 3 0.00000000
54 6 4 0.00000000
55 6 5 0.00000000
56 6 6 0.00000000
57 6 7 0.00000000
58 6 8 0.00000000
59 6 9 0.00000000
60 6 10 0.00000000
61 7 1 0.00000000
62 7 2 0.00000000
63 7 3 0.00000000
64 7 4 0.00000000
65 7 5 0.00000000
66 7 6 0.00000000
67 7 7 0.00000000
68 7 8 0.00000000
69 7 9 0.81578597
70 7 10 0.00000000
71 8 1 0.00000000
72 8 2 0.00000000
73 8 3 0.00000000
74 8 4 0.00000000
75 8 5 0.00000000
76 8 6 0.00000000
77 8 7 0.00000000
78 8 8 0.00000000
79 8 9 0.00000000
80 8 10 0.00000000
81 9 1 0.00000000
82 9 2 0.00000000
83 9 3 0.00000000
84 9 4 0.00000000
85 9 5 0.00000000
86 9 6 0.00000000
87 9 7 0.00000000
88 9 8 0.00000000
89 9 9 0.00000000
90 9 10 0.31717559
91 10 1 0.00000000
92 10 2 0.00000000
93 10 3 0.00000000
94 10 4 0.00000000
95 10 5 0.00000000
96 10 6 0.00000000
97 10 7 0.00000000
98 10 8 0.00000000
99 10 9 0.00000000
100 10 10 0.00000000
fromnode tonode weight
1 1 1 0.00000000
2 1 2 0.00000000
3 1 3 0.70840076
4 1 4 0.00000000
5 1 5 0.00000000
6 1 6 0.00000000
7 1 7 0.00000000
8 1 8 0.27267918
9 1 9 0.00000000
10 1 10 0.00000000
11 2 1 0.00000000
12 2 2 0.00000000
13 2 3 0.00000000
14 2 4 0.00000000
15 2 5 0.55328424
16 2 6 0.00000000
17 2 7 0.00000000
18 2 8 0.00000000
19 2 9 0.00000000
20 2 10 0.62035742
21 3 1 0.00000000
22 3 2 0.00000000
23 3 3 0.00000000
24 3 4 0.00000000
25 3 5 0.00000000
26 3 6 0.20929305
27 3 7 0.00000000
28 3 8 0.69755197
29 3 9 0.00000000
30 3 10 0.00000000
31 4 1 0.00000000
32 4 2 0.00000000
33 4 3 0.00000000
34 4 4 0.00000000
35 4 5 0.02630632
36 4 6 0.00000000
37 4 7 0.00000000
38 4 8 0.00000000
39 4 9 0.00000000
40 4 10 0.00000000
41 5 1 0.00000000
42 5 2 0.00000000
43 5 3 0.00000000
44 5 4 0.00000000
45 5 5 0.00000000
46 5 6 0.00000000
47 5 7 0.00000000
48 5 8 0.34808191
49 5 9 0.00000000
50 5 10 0.00000000
51 6 1 0.00000000
52 6 2 0.00000000
53 6 3 0.00000000
54 6 4 0.00000000
55 6 5 0.00000000
56 6 6 0.00000000
57 6 7 0.00000000
58 6 8 0.00000000
59 6 9 0.00000000
60 6 10 0.00000000
61 7 1 0.00000000
62 7 2 0.00000000
63 7 3 0.00000000
64 7 4 0.00000000
65 7 5 0.00000000
66 7 6 0.00000000
67 7 7 0.00000000
68 7 8 0.00000000
69 7 9 0.81578597
70 7 10 0.00000000
71 8 1 0.00000000
72 8 2 0.00000000
73 8 3 0.00000000
74 8 4 0.00000000
75 8 5 0.00000000
76 8 6 0.00000000
77 8 7 0.00000000
78 8 8 0.00000000
79 8 9 0.00000000
80 8 10 0.00000000
81 9 1 0.00000000
82 9 2 0.00000000
83 9 3 0.00000000
84 9 4 0.00000000
85 9 5 0.00000000
86 9 6 0.00000000
87 9 7 0.00000000
88 9 8 0.00000000
89 9 9 0.00000000
90 9 10 0.31717559
91 10 1 0.00000000
92 10 2 0.00000000
93 10 3 0.00000000
94 10 4 0.00000000
95 10 5 0.00000000
96 10 6 0.00000000
97 10 7 0.00000000
98 10 8 0.00000000
99 10 9 0.00000000
100 10 10 0.00000000
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