Description Usage Arguments Details Value See Also
This function creates a pdf figure of plots showing the results of the imageJ analysis for resistance (radius from the disk, RAD), sensitivity (slope) and tolerance (fraction of growth above RAD, FoG).
1 2 3 4 |
projectName |
the short name to be used for the project |
type |
specify whether the dataset to use is a dataframe with all data ("df") or an aggregated dataframe ("ag") |
param |
what parameter to plot (supported: "RAD20", "RAD50", "RAD80", "FoG20", "FoG50", "FoG80", "slope"), default = "RAD20" |
ymin |
a numeric value indicating the minimum y value plotted in each plot |
ymax |
a numeric value indicating the maximum y value plotted in each plot |
width |
a numeric value indicating the width of the pdf file generated |
height |
a numeric value indicating the height of the pdf file generated |
xlabels |
either a vector containing the desired x-axis labels, or a single value indicating the column name that contains the values to use (likely either the 'line' column or one of the type columns), default = "line". |
xlabAngle |
indicates whether to print the x axis labels on a angle, if a number is provided this will be the angle used. The defauilt is not to plot on an angle, default = NA. |
order |
can be either "factor" or "custom". If custom, supply a numberial vector the same length as the dataframe to indicate the desired order. If factor, supply the column name in |
orderFactor |
if |
overwrite |
a logical value indicating whether to overwrite existing figures created on the same day for the same project name |
savePDF |
a logical value indicating whether to save a PDF file or open a new quartz window. Defaults to TRUE (saves a pdf file). |
popUp |
a logical value indicating whether to pop up the figure after it has been created |
barplot |
whether to plot values as a barplot (barplot = TRUE) or dotplot (barplot = FALSE), default = TRUE. Only possible when |
Basic parameter plotting functions to plot a single parameter. Input can be the dataframe from either createDataframe
type="df"
or from aggregateData
type=="ag"
.
Either a pdf figure figure (projectName_RAD-FoG.pdf) saved to the 'figures' directory or a figure on screen
twoParamPlot
for a similar figure with two parameters or threeParamPlot
for a similar figure with three parameters
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