An R object that contains associations between HPPA terms and Human Entrez Genes. This data is first prepared based on http://purl.obolibrary.org/obo/hp.obo and http://compbio.charite.de/hudson/job/hpo.annotations.monthly/lastStableBuild/artifact/annotation/ALL_SOURCES_ALL_FREQUENCIES_genes_to_phenotype.txt.
an object of class "GS", a list with following components:
set_info: a matrix of nSet X 4 containing gene set
information, where nSet is the number of gene sets (i.e. HPPA terms),
and the 4 columns are "setID" (i.e. "Term ID"), "name" (i.e. "Term
Name"), "namespace" and "distance"
gs: a list of gene sets, each storing gene members
thereof. Always, gene sets are identified by "setID" and gene members
identified by "Entrez ID"
Robinson et al. (2012) The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease. Am J Hum Genet, 83:610-615.
Loading required package: igraph Attaching package: 'igraph' The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union Loading required package: supraHex Loading required package: hexbin 'org.Hs.egHPPA' (from package 'dnet' version 1.1.1) has been loaded into the working environment (at 2018-01-23 22:13:33)  "gs" "set_info"
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