Description Usage Arguments Value Note See Also Examples

View source: R/dEnricherView.r

`dEnricherView`

is supposed to view results of enrichment analysis
by `dEnricher`

.

1 2 3 4 5 6 7 | ```
dEnricherView(
eTerm,
top_num = 10,
sortBy = c("adjp", "pvalue", "zscore", "nAnno", "nOverlap", "none"),
decreasing = NULL,
details = F
)
``` |

`eTerm` |
an object of class "eTerm" |

`top_num` |
the maximum number of gene sets (terms) will be viewed |

`sortBy` |
which statistics will be used for sorting and viewing gene sets (terms). It can be "adjp" for adjusted p value, "pvalue" for p value, "zscore" for enrichment z-score, "nAnno" for the number of sets (terms), "nOverlap" for the number in overlaps, and "none" for ordering according to ID of gene sets (terms) |

`decreasing` |
logical to indicate whether to sort in a decreasing order. If it is null, it would be true for "zscore", "nAnno" or "nOverlap"; otherwise it would be false |

`details` |
logical to indicate whether the detailed information of gene sets (terms) is also viewed. By default, it sets to false for no inclusion |

a data frame with following components:

`setID`

: term ID; as rownames`name`

: term name`nAnno`

: number in gene members annotated by a term`nOverlap`

: number in overlaps`zscore`

: enrichment z-score`pvalue`

: nominal p value`adjp`

: adjusted p value`namespace`

: term namespace; optional, it is only appended when "details" is true`distance`

: term distance; optional, it is only appended when "details" is true`members`

: members (represented as Gene Symbols) in overlaps; optional, it is only appended when "details" is true

none

1 | ```
#dEnricherView(eTerm, top_num=10, sortBy="adjp", decreasing=FALSE, details=TRUE)
``` |

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