figure.function.concordance: Figure: Plots the Concordances

In dplRCon: Concordance for Dendroclimatology

Description

Plots the concordance indices. This is used to generate the Figure in Concordance: A measure of similarity between matrices of time series with applications in dendroclimatology".

Usage

figure.function.concordance(con.indices, x.lim)

Arguments

con.indices	This is the output generated from the function overall.concordance.period.
x.lim	This is a vector with the start and end year for the required plot.

Value

A figure with the concordance indices and their confidence intervals, a smoother fitted through the indices and the confidence interval for the mean concordance.

Author(s)

Maryann Pirie

Examples

## Not run: 
#Subset "near-pith" is the material within 0 -20cm from the estimated pith
spline200.sub0.20.n   <- TruncSeriesPithoffset( ring.raw, ring.stand, dbh.po.nc, c(1,200))
spline200.sub20.2000.n  <- TruncSeriesPithoffset( ring.raw, ring.stand, dbh.po.nc, c(200,200000))
boot.0.20   <-  series.bootstrap( spline200.sub0.20.n$sub.series.stand, stat, 999,
    names.stat, aver.by.tree = FALSE)
boot.20.2000   <- series.bootstrap(spline200.sub20.2000.n$sub.series.stand, stat, 999,
   names.stat, aver.by.tree = FALSE)

overall.precision.HUP <- overall.concordance.period(spline200.sub20.2000.n$sub.series.stand ,
   spline200.sub0.20.n$sub.series.stand,
   boot.20.2000$boot.series.mean,  boot.0.20$boot.series.mean ,1 , concordance.indices,
   c(1880,1999), trim.alpha=0.005, concordance.beta=0.5)

figure.function.concordance (overall.precision.HUP, x.lim=c(1880,2000))
## End(Not run)

dplRCon documentation built on May 2, 2019, 2:02 p.m.