Dynamic Time Warp: find the optimal alignment between two time series.

Package: | dtw |

Type: | Package |

Version: | 1.15 |

Date: | 2012-8-22 |

License: | GPL-2 |

URL: | http://dtw.r-forge.r-project.org |

Comprehensive implementation of Dynamic Time Warping (DTW) algorithms in R.

The DTW algorithm computes the stretch of the time axis which optimally maps one given timeseries (query) onto whole or part of another (reference). It yields the remaining cumulative distance after the alignment and the point-by-point correspondence (warping function). DTW is widely used e.g. for classification and clustering tasks in econometrics, chemometrics and general timeseries mining.

Please see documentation for function `dtw`

, which is the
main entry point to the package.

The R implementation in dtw provides:

arbitrary windowing functions (global constraints), eg. the Sakoe-Chiba band; see

`dtwWindowingFunctions`

arbitrary transition types (also known as step patterns, slope constraints, local constraints, or DP-recursion rules). This includes dozens of well-known types; see

`stepPattern`

:all step patterns classified by Rabiner-Juang, Sakoe-Chiba, and Rabiner-Myers;

symmetric and asymmetric;

Rabiner's smoothed variants;

arbitrary, user-defined slope constraints

partial matches: open-begin, open-end, substring matches

proper, pattern-dependent, normalization (exact average distance per step)

the Minimum Variance Matching (MVM) algorithm (Latecki et al.)

Multivariate timeseries can be aligned with arbitrary local distance
definitions, leveraging the `dist`

function of
package proxy. DTW itself becomes a distance function with the
dist semantics.

In addition to computing alignments, the package provides:

methods for plotting alignments and warping functions in several classic styles (see plot gallery);

graphical representation of step patterns;

functions for applying a warping function, either direct or inverse; and more.

If you use this software, please cite it according to
`citation("dtw")`

. The package home page is at
http://dtw.r-forge.r-project.org.

To get the latest stable version from CRAN, use
`install.packages("dtw")`

. To get the development version
(possibly unstable), use
`install.packages("dtw",repos="http://r-forge.r-project.org")`

.

Toni Giorgino, Copyright (c) 2007-2013

Istituto di Ingegneria Biomedica (ISIB-CNR)

National Research Council of Italy

Maintainer: toni.giorgino@gmail.com

Toni Giorgino. *Computing and Visualizing Dynamic Time Warping
Alignments in R: The dtw Package.* Journal of Statistical
Software, 31(7), 1-24. http://www.jstatsoft.org/v31/i07/

Tormene, P.; Giorgino, T.; Quaglini, S. & Stefanelli,
M. *Matching incomplete time series with dynamic time warping: an
algorithm and an application to post-stroke rehabilitation.* Artif
Intell Med, 2009, 45, 11-34

Rabiner, L. R., & Juang, B.-H. (1993). Chapter 4 in
*Fundamentals of speech
recognition.* Englewood Cliffs, NJ: Prentice Hall.

`dtw`

for the main entry point to the package;
`dtwWindowingFunctions`

for global constraints;
`stepPattern`

for local constraints;
`distance`

, `outer`

for
building a local cost matrix with multivariate
timeseries and custom distance functions.

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