dDDMConf: Drift Diffusion Model with time-dependent confidence

In dynConfiR: Dynamic Models for Confidence and Response Time Distributions

Drift Diffusion Model with time-dependent confidence

Description

Likelihood function and random number generator for the Drift Diffusion Model with confidence computed as decision time. It includes following parameters: DDM parameters: a (threshold separation), z (starting point; relative), v (drift rate), t0 (non-decision time/ response time constant), d (differences in speed of response execution), sv (inter-trial-variability of drift), st0 (inter-trial-variability of non-decision components), sz (inter-trial-variability of relative starting point), s (diffusion constant).

Usage

dDDMConf(rt, response = "upper", th1, th2, a, v, t0 = 0, z = 0.5,
  d = 0, sz = 0, sv = 0, st0 = 1, s = 1, precision = 1e-05,
  z_absolute = FALSE, stop_on_error = TRUE, stop_on_zero = FALSE,
  st0stepsize = 0.001)

rDDMConf(n, a, v, t0 = 0, z = 0.5, d = 0, sz = 0, sv = 0, st0 = 2,
  s = 1, delta = 0.01, maxrt = 15, z_absolute = FALSE,
  stop_on_error = TRUE)

Arguments

rt	a vector of RTs. Or for convenience also a data.frame with columns rt and response.
response	character vector, indicating the decision, i.e. which boundary was met first. Possible values are c("upper", "lower") (possibly abbreviated) and "upper" being the default. Alternatively, a numeric vector with values 1=lower and 2=upper or -1=lower and 1=upper, respectively. For convenience, response is converted via as.numeric also allowing factors. Ignored if the first argument is a data.frame.
th1	together with th2: scalars or numerical vectors giving the lower and upper bound of the interval, in which the accumulator should end at the time of the confidence judgment (i.e. at time rt+tau). Only values with th2>=th1 are accepted.
th2	(see th1)
a	threshold separation. Amount of information that is considered for a decision. Large values indicate a conservative decisional style. Typical range: 0.5 < a < 2
v	drift rate. Average slope of the information accumulation process. The drift gives information about the speed and direction of the accumulation of information. Large (absolute) values of drift indicate a good performance. If received information supports the response linked to the upper threshold the sign will be positive and vice versa. Typical range: -5 < v < 5
t0	non-decision time or response time constant (in seconds). Lower bound for the duration of all non-decisional processes (encoding and response execution). Typical range: 0.1 < t0 < 0.5. Default is 0.
z	(by default relative) starting point. Indicator of an a priori bias in decision making. When the relative starting point z deviates from 0.5, the amount of information necessary for a decision differs between response alternatives. Default is 0.5 (i.e., no bias).
d	differences in speed of response execution (in seconds). Positive values indicate that response execution is faster for responses linked to the upper threshold than for responses linked to the lower threshold. Typical range: -0.1 < d < 0.1. Default is 0.
sz	inter-trial-variability of starting point. Range of a uniform distribution with mean z describing the distribution of actual starting points from specific trials. Values different from 0 can predict fast errors (but can slow computation considerably). Typical range: 0 < sz < 0.2. Default is 0. (Given in relative range i.e. bounded by 2*min(z, 1-z))
sv	inter-trial-variability of drift rate. Standard deviation of a normal distribution with mean v describing the distribution of actual drift rates from specific trials. Values different from 0 can predict slow errors. Typical range: 0 < sv < 2. Default is 0.
st0	inter-trial-variability of non-decisional components. Range of a uniform distribution with mean t0 + st0/2 describing the distribution of actual t0 values across trials. Accounts for response times below t0. Reduces skew of predicted RT distributions. Values different from 0 can slow computation considerably. Typical range: 0 < st0 < 0.2. Default is 0.
s	diffusion constant. Standard deviation of the random noise of the diffusion process (i.e., within-trial variability), scales a, v, sv, and th's. Needs to be fixed to a constant in most applications. Default is 1. Note that the default used by Ratcliff and in other applications is often 0.1.
precision	numerical scalar value. Precision of calculation. Corresponds to the stepsize of integration w.r.t. z. Default is 1e-5.
z_absolute	logical. Determines whether z is treated as absolute start point (TRUE) or relative (FALSE; default) to a.
stop_on_error	Should the diffusion functions return 0 if the parameters values are outside the allowed range (= FALSE) or produce an error in this case (= TRUE).
stop_on_zero	Should the computation of densities stop as soon as a density value of 0 occurs. This may save a lot of time if the function is used for a likelihood function. Default: FALSE
st0stepsize	numerical scalar value. Stepsize for integration over t0.
n	integer. The number of samples generated.
delta	numeric. Discretization step size for simulations in the stochastic process
maxrt	numeric. Maximum decision time returned. If the simulation of the stochastic process exceeds a decision time of maxrt, the response will be set to 0 and the maxrt will be returned as rt.

Details

For the confidence part: th1 and th2 (lower and upper thresholds for decision time interval).

Note that the parameterization or defaults of non-decision time variability st0 and diffusion constant s differ from what is often found in the literature.

The Ratcliff diffusion model (Ratcliff and McKoon, 2008) is a mathematical model for two-choice discrimination tasks. It is based on the assumption that information is accumulated continuously until one of two decision thresholds is hit. For introduction see Ratcliff and McKoon (2008).

This model incorporates the idea, that the decision time T is informative for stimulus difficulty and thus confidence is computed as a monotone function of \frac{1}{\sqrt{T}}. In this implementation, confidence is the decision time, directly. Here, we use an interval, given by th1 and th2, assuming that the data is given with discrete judgments and pre-processed, s.t. these discrete ratings are translated to the respective intervals.

All functions are fully vectorized across all parameters as well as the response to match the length or rt (i.e., the output is always of length equal to rt). This allows for trial wise parameters for each model parameter.

For convenience, the function allows that the first argument is a data.frame containing the information of the first and second argument in two columns (i.e., rt and response). Other columns (as well as passing response separately argument) will be ignored.

Value

dDDMConf gives the density/likelihood/probability of the diffusion process producing a decision of response at time rt and a confidence judgment corresponding to the interval [ th1, th2]. The value will be a numeric vector of the same length as rt.

rDDMConf returns a data.frame with three columns and n rows. Column names are rt (response time), response (-1 (lower) or 1 (upper), indicating which bound was hit), conf for the decision time (without non-decision time component; not discretized!).

The distribution parameters (as well as response, th1 and th2) are recycled to the length of the result. In other words, the functions are completely vectorized for all parameters and even the response boundary.

Note

The parameterization of the non-decisional components, t0 and st0, differs from the parameterization sometimes used in the literature. In the present case t0 is the lower bound of the uniform distribution of length st0, but not its midpoint. The parameterization employed here is in line with the functions in the rtdists package.

The default diffusion constant s is 1 and not 0.1 as in most applications of Roger Ratcliff and others. Usually s is not specified as the other parameters: a, v, and sv, may be scaled to produce the same distributions (as is done in the code).

The function code is basically an extension of the ddiffusion function from the package rtdists for the Ratcliff diffusion model.

Author(s)

For the original rtdists package: Underlying C code by Jochen Voss and Andreas Voss. Porting and R wrapping by Matthew Gretton, Andrew Heathcote, Scott Brown, and Henrik Singmann. qdiffusion by Henrik Singmann. For the dDDMConf function the C code was extended by Sebastian Hellmann.

References

Ratcliff, R., & McKoon, G. (2008). The diffusion decision model: Theory and data for two-choice decision tasks. Neural Computation, 20(4), 873-922.

Hellmann, S., Zehetleitner, M., & Rausch, M. (2023). Simultaneous modeling of choice, confidence and response time in visual perception. Psychological Review 2023 Mar 13. doi: 10.1037/rev0000411. Epub ahead of print. PMID: 36913292.

Examples

# Plot rt distribution ignoring confidence
curve(dDDMConf(x, "upper", 0, Inf, a=2, v=0.4, sz=0.2, sv=0.9), xlim=c(0, 2), lty=2)
curve(dDDMConf(x, "lower", 0, Inf, a=2, v=0.4, sz=0.2, sv=0.9), col="red", lty=2, add=TRUE)
curve(dDDMConf(x, "upper", 0, Inf, a=2, v=0.4),add=TRUE)
curve(dDDMConf(x, "lower", 0, Inf, a=2, v=0.4), col="red", add=TRUE)
# Generate a random sample
dfu <- rDDMConf(5000, a=2,v=0.5,t0=0,z=0.5,d=0,sz=0,sv=0, st0=2, s=1)
# Same RT distribution but upper and lower responses changed
dfl <- rDDMConf(50, a=2,v=-0.5,t0=0,z=0.5,d=0,sz=0,sv=0, st0=2, s=1)
head(dfu)

dDDMConf(dfu, th1=0.5, th2=2.5, a=2, v=.5, st0=2)[1:5]
# Scaling diffusion parameters leads do same density values
s <- 2
dDDMConf(dfu, th1=0.5, th2=2.5, a=2*s, v=.5*s, s=2, st0=2)[1:5]
if (requireNamespace("ggplot2", quietly = TRUE)) {
  require(ggplot2)
  ggplot(dfu, aes(x=rt, y=conf))+
    stat_density_2d(aes(fill = after_stat(density)), geom = "raster", contour = FALSE) +
    facet_wrap(~response)
}
boxplot(conf~response, data=dfu)

# Restricting to specific confidence region
dfu <- dfu[dfu$conf >0 & dfu$conf <1,]
dDDMConf(dfu, th1=0, th2=1, a=2, v=0.5, st0=2)[1:5]

# If lower confidence threshold is higher than the upper, the function throws an error,
# except when stop_on_error is FALSE
dDDMConf(dfu[1:5,], th1=1, th2=0, a=2, v=0.5, stop_on_error = FALSE)

dynConfiR documentation built on May 29, 2024, 5:10 a.m.