dynaTree: Dynamic Trees for Learning and Design

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Inference by sequential Monte Carlo for dynamic tree regression and classification models with hooks provided for sequential design and optimization, fully online learning with drift, variable selection, and sensitivity analysis of inputs. Illustrative examples from the original dynamic trees paper are facilitated by demos in the package; see demo(package="dynaTree").

Author
Robert B. Gramacy <rbgramacy@chicagobooth.edu> and Matt A. Taddy <taddy@chicagobooth.edu> and Christoforos Anagnostopoulos <christoforos.anagnostopoulos06@imperial.ac.uk>
Date of publication
2016-06-06 23:33:06
Maintainer
Robert B. Gramacy <rbgramacy@chicagobooth.edu>
License
LGPL
Version
1.2-9
URLs

View on CRAN

Man pages

alcX.dynaTree
Calculate the ALC or predictive entropy statistic at the X...
deletecloud
Copy and Delete C-side Clouds in dynaTree Objects
dynaTree
Fitting Dynamic Tree Models
dynaTree-class
Class "dynaTree"
dynaTree-internal
Internal dynaTree Functions
dynaTree-package
Dynamic trees for learning and design
elec2
The ELEC2 Data Set
getBF
Extract a Path of (log) Bayes Factors
plot.dynaTree
Plotting Predictive Distributions of Dynamic Tree models
predict.dynaTree
Prediction for Dynamic Tree Models
rejuvenate.dynaTree
Rejuvenate particles from the dynaTree posterior
relevance.dynaTree
Calculate relevance statistics for input coordinates
retire.dynaTree
Retire (i.e. remove) data from the a dynaTree model
sens.dynaTree
Monte Carlo Sensitivity Analysis for dynaTree Models
update.dynaTree
Updating a Dynamic Tree Model With New Data
varpropuse
Calculate the proportion of variables used in tree splits,...

Files in this package

dynaTree
dynaTree/src
dynaTree/src/matrix.c
dynaTree/src/Makevars
dynaTree/src/pall.c
dynaTree/src/rhelp.c
dynaTree/src/linalg.c
dynaTree/src/tree.cc
dynaTree/src/cloud.h
dynaTree/src/lh.c
dynaTree/src/tree.h
dynaTree/src/lh.h
dynaTree/src/rhelp.h
dynaTree/src/particle.cc
dynaTree/src/cloud.cc
dynaTree/src/linalg.h
dynaTree/src/particle.h
dynaTree/src/pall.h
dynaTree/src/dynaTree.cc
dynaTree/src/matrix.h
dynaTree/NAMESPACE
dynaTree/demo
dynaTree/demo/fried.R
dynaTree/demo/class2d.R
dynaTree/demo/elec2.R
dynaTree/demo/online.R
dynaTree/demo/design.R
dynaTree/demo/00Index
dynaTree/demo/reg1d.R
dynaTree/data
dynaTree/data/elec2.rda
dynaTree/R
dynaTree/R/000.R
dynaTree/R/plot.R
dynaTree/R/predict.R
dynaTree/R/dynaTree.R
dynaTree/MD5
dynaTree/DESCRIPTION
dynaTree/ChangeLog
dynaTree/man
dynaTree/man/retire.dynaTree.Rd
dynaTree/man/elec2.Rd
dynaTree/man/sens.dynaTree.Rd
dynaTree/man/relevance.dynaTree.Rd
dynaTree/man/rejuvenate.dynaTree.Rd
dynaTree/man/plot.dynaTree.Rd
dynaTree/man/update.dynaTree.Rd
dynaTree/man/varpropuse.Rd
dynaTree/man/getBF.Rd
dynaTree/man/deletecloud.Rd
dynaTree/man/dynaTree-internal.Rd
dynaTree/man/alcX.dynaTree.Rd
dynaTree/man/dynaTree.Rd
dynaTree/man/dynaTree-package.Rd
dynaTree/man/predict.dynaTree.Rd
dynaTree/man/dynaTree-class.Rd