Man pages for dynplot
Visualising Single-Cell Trajectories
| add_cell_coloring | Add colouring to a set of cells. |
| add_density_coloring | Color cells using a background density |
| add_milestone_coloring | Add colouring to a set of milestones. |
| dynplot | dynplot: Plotting Single-Cell Trajectories |
| empty_plot | Create an empty plot for spacing |
| example_bifurcating | An example bifurcating dataset |
| example_disconnected | An example disconnected dataset |
| example_linear | An example linear dataset |
| example_tree | An example tree dataset |
| get_milestone_palette_names | Get the names of valid color palettes |
| linearise_cells | Prepare a trajectory for linearised visualisation. |
| plot_dendro | Plot a trajectory as a dendrogram |
| plot_dimred | Plot a trajectory in a (given) dimensionality reduction |
| plot_graph | Plot a trajectory as a graph |
| plot_heatmap | Plot expression data along a trajectory |
| plot_linearised_comparison | Compare two trajectories as a pseudotime scatterplot |
| plot_onedim | Plot a trajectory as a one-dimensional set of connected... |
| plot_strip | Plot strip |
| plot_topology | Plot the topology of a trajectory |
| project_waypoints_coloured | Project the waypoints |
| theme_clean | We like our plots clean |
| theme_graph | We like our plots clean |
