linearise_cells: Prepare a trajectory for linearised visualisation.

In dynplot: Visualising Single-Cell Trajectories

Description

This is an internal function and should probably not be used manually.

Usage

linearise_cells(
  trajectory,
  margin = 0.05,
  no_margin_between_linear = TRUE,
  one_edge = FALSE,
  equal_cell_width = FALSE
)

Arguments

trajectory	A dynwrap trajectory.
margin	A margin between trajectory segments.
no_margin_between_linear	Whether to add a margin only when a branch occurs.
one_edge	Whether or not to assign each cell to one cell only. This can occur when a cell is on a branching point, or in between multiple edges.
equal_cell_width	Whether or not to space segments according to cell count.

Value

A named list with values:

• milestone_network: A linearised version of trajectory$milestone_network with extra columns: add_margin, n_margins, cumstart, cumend, edge_id.

• progressions: A linearised version of trajectory$progressions with extra columns: percentage2, length, directed, add_margin, n_margins, cumstart, cumend, edge_id, cumpercentage.

• margin: The used margin (numeric).

Examples

linearise_cells(example_bifurcating)

dynplot documentation built on Dec. 11, 2021, 9:33 a.m.