plot_linearised_comparison: Compare two trajectories as a pseudotime scatterplot

In dynplot: Visualising Single-Cell Trajectories

Description

Compare two trajectories as a pseudotime scatterplot

Usage

plot_linearised_comparison(
  traj1,
  traj2,
  reorder = TRUE,
  margin = 0.05,
  reorder_second_by = c("mapping", "optimisation")
)

Arguments

traj1	The first trajectory
traj2	The second trajectory
reorder	Whether to reorder the trajectory
margin	A margin between trajectory segments.
reorder_second_by	How to reorder the second trajectory, either by mapping the milestones from both trajectories (mapping), or by trying to correlate the orderings between the two trajectories (optimisation)

Value

A scatterplot comparison ggplot of two linearised trajectories.

Examples

data(example_bifurcating)
plot_linearised_comparison(example_bifurcating, example_bifurcating)

dynplot documentation built on Dec. 11, 2021, 9:33 a.m.