R/eHOF-package.R

In eHOF: Extended HOF (Huisman-Olff-Fresco) Models

#' Extended HOF (Huisman-Olff-Fresco) Models
#' @keywords internal
"_PACKAGE"
#' @aliases eHOF
#' @encoding UTF-8
#' @description  Extended and enhanced hierarchical logistic regression models (called Huisman-Olff-Fresco in biology, see Huisman et al. 1993 Journal of Vegetation Science <doi:10.1111/jvs.12050>) models. Response curves along one-dimensional gradients including no response, monotone, plateau, unimodal and bimodal models.
#'
#' @references
#' Jansen, F., Dengler, J (2011) Plant names in vegetation databases - a neglected source of bias,
#' Journal of vegetation science, 21(6), 1179-1186. http://dx.doi.org/10.1111/j.1654-1103.2010.01209.x
#'
#' @importFrom mgcv gam
#' @importFrom lattice xyplot panel.xyplot
#' @importFrom "utils" "setTxtProgressBar" "txtProgressBar"
#' @importFrom "stats" "D" "binomial" "coef" "deriv" "deviance" "fitted" "glm" "logLik" "nlminb" "optim" "optimize" "plogis" "predict" "printCoefmat" "rbinom"
#' @importFrom grDevices "gray" "grey" "rainbow"
#' @importFrom graphics axTicks axis boxplot hist layout legend lines matlines mtext par plot points polygon text title
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