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Implements a simple, likelihoodbased estimation of the reproduction number (R0) using a branching process with a Poisson likelihood. This model requires knowledge of the serial interval distribution, and dates of symptom onsets. Infectiousness is determined by weighting R0 by the probability mass function of the serial interval on the corresponding day. It is a simplified version of the model introduced by Cori et al. (2013) <doi:10.1093/aje/kwt133>.
Package details 


Author  Thibaut Jombart [aut, cre], Anne Cori [aut], Pierre Nouvellet [aut], Janetta Skarp [aut], Zhian N. Kamvar [ctb], Tim Taylor [ctb] (<https://orcid.org/0000000285877113>) 
Maintainer  Thibaut Jombart <thibautjombart@gmail.com> 
License  MIT + file LICENSE 
Version  0.0.5 
URL  https://www.repidemicsconsortium.org/earlyR/ 
Package repository  View on CRAN 
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