sample_R: Get a sample of plausible Reproduction Numbers
In earlyR: Estimation of Transmissibility in the Early Stages of a Disease Outbreak

Description Usage Arguments Author(s) Examples

View source: R/sample_R.R

This function derives a sample of plausible R values from an earlyR object (as returned by get_R). The probability of each returned values of R are directly proportional to their likelihood.

1	sample_R(x, n = 100)

`x`	An `earlyR` object.
`n`	The number of R values to sample.

Thibaut Jombart thibautjombart@gmail.com

if (require(incidence)) {
 x <- incidence(c(1, 5, 5, 12, 45, 65))
 plot(x)
 res <- get_R(x, disease = "ebola")
 res
 plot(res)

 sample_R(res, 10)
 hist(sample_R(res, 1000), col = "grey", border = "white")
}